Marchantia polymorpha genome resources


Genome sequences

Genomic fasta file JGI 3.1 (JGI 3.1, 2957 contigs)

[Download] (gz compressed, 61.6MB)

Genomic fasta file JGI 0.6 (JGI 0.6, 4447 contigs)

[Download] (gz compressed, 63.6MB)

Functional annotation

Function information for each gene/transcript in a tab-separated table.

Functional annotation for each gene

[Download] (gz compressed, 895.6KB)

Functional annotation for each transcript

[Download] (gz compressed, 960.8KB)

Same as above, in a different format (one transcript per line)

[Download] (gz compressed, 743.1KB)

Gene structures and sequences for the JGI 3.1 genome.

'All transcripts' contain all predicted transcripts including splice variants. 'Primary transcripts' contain only representative transcripts from each gene locus (i.e. splice variants is not included).

All transcripts Primary transcripts Alternative transcripts
Gene structure
(GFF format)
Download (2.1MB) Download (2.2MB) Download (763.4KB)
Gene sequences
(UTR + CDS + intron)

(Fasta format)
Download (22.2MB)
Download (with annotation, 24.0MB)
Download (19.8MB)
Download (with annotation, 21.5MB)
Download (6.4MB)
Download (with annotation, 6.9MB)
mRNA sequences (UTR + CDS)
(Fasta format)
Download (14.1MB)
Download (with annotation, 15.4MB)
Download (12.9MB)
Download (with annotation, 13.7MB)
Download (3.2MB)
Download (with annotation, 3.4MB)
Coding sequences
(Fasta format)
Download (7.8MB)
Download (with annotation, 8.5MB)
Download (7.3MB)
Download (with annotation, 8.0MB)
Download (1.7MB)
Download (with annotation, 1.9MB)
Protein sequences
(Fasta format)
Download (5.0MB)
Download (with annotation, 5.7MB)
Download (4.7MB)
Download (with annotation, 5.5MB)
Download (1.1MB)
Download (with annotation, 1.3MB)