Mp1g05480



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:3.40.50.300 -
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
SMART SM00487 ultradead3
Gene3D G3DSA:2.40.50.40 -
SMART SM00490 helicmild6
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
CDD cd18659 CD2_tandem
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SUPERFAMILY SSF54160 Chromo domain-like
SMART SM01176 DUF4208_2
Pfam PF13907 Chromodomain-helicase-DNA-binding protein 1-like, C-terminal
Pfam PF00176 SNF2-related domain
Gene3D G3DSA:3.40.50.10810 -
CDD cd18793 SF2_C_SNF
Coils Coil Coil
FunFam G3DSA:3.40.50.300:FF:000130 Chromodomain-helicase-DNA-binding protein 2 isoform 1
FunFam G3DSA:3.40.50.10810:FF:000005 Photoperiod-independent early flowering 1
Gene3D G3DSA:1.10.10.60 -
CDD cd18660 CD1_tandem
SMART SM00298 chromo_7
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
KOG KOG0384 Chromodomain-helicase DNA-binding protein; [K]
KOG KOG2600 U3 small nucleolar ribonucleoprotein (snoRNP) subunit - Mpp10p; C-term missing; [A]
MapolyID Mapoly0005s0060 -

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.2 Chromatin related protein Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g05480.1 chr1:5918665..5934682 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g05480.2 chr1:5918665..5934682 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.