Mp1g15800



Description

Annotation

Database ID Description
CDD cd20071 SET_SMYD
ProSiteProfiles PS50280 SET domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00028 tpr_5
Gene3D G3DSA:2.170.270.10 SET domain
SUPERFAMILY SSF48452 TPR-like
SUPERFAMILY SSF82199 SET domain
Pfam PF00856 SET domain
PANTHER PTHR47643 TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710)
Pfam PF13432 Tetratricopeptide repeat
ProSiteProfiles PS50005 TPR repeat profile.
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
SMART SM00317 set_7
KOG KOG0553 TPR repeat-containing protein; C-term missing; [R]
KOG KOG2084 Predicted histone tail methylase containing SET domain; C-term missing; [B]
MapolyID Mapoly0033s0081 -

Nomenclature

Gene symbol Product Transcript ID Status
MpATXR1 Chromatin related protein Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g15800.1 chr1:16453648..16459026 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.