Mp2g05860



Description

Annotation

Database ID Description
Gene3D G3DSA:3.40.50.300 -
SMART SM00487 ultradead3
Pfam PF00176 SNF2-related domain
Pfam PF21325 E3 ubiquitin-protein ligase SHPRH, first helical domain
CDD cd18793 SF2_C_SNF
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50089 Zinc finger RING-type profile.
PANTHER PTHR45865 E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER
Pfam PF21324 E3 ubiquitin-protein ligase SHPRH, second helical domain
Coils Coil Coil
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
CDD cd18070 DEXQc_SHPRH
SUPERFAMILY SSF57850 RING/U-box
SMART SM00490 helicmild6
Gene3D G3DSA:3.40.50.10810 -
Pfam PF00271 Helicase conserved C-terminal domain
KEGG K15710 E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.- 2.3.2.27]
KOG KOG0298 DEAD box-containing helicase-like transcription factor/DNA repair protein; N-term missing; [L]
MapolyID Mapoly0021s0042 -

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.10 Chromatin related protein Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g05860.1 chr2:6615641..6627370 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g05860.2 chr2:6617906..6627616 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.