Mp2g15880



Description

Annotation

Database ID Description
CDD cd06071 Beach
Gene3D G3DSA:2.30.29.30 -
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF50978 WD40 repeat-like
Coils Coil Coil
ProSiteProfiles PS50197 BEACH domain profile.
Gene3D G3DSA:1.25.10.10 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
ProSiteProfiles PS51783 BEACH-type PH domain profile.
ProSiteProfiles PS50178 Zinc finger FYVE/FYVE-related type profile.
SMART SM00064 fyve_4
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
PANTHER PTHR46108 BLUE CHEESE
SMART SM00320 WD40_4
Gene3D G3DSA:2.60.120.200 -
FunFam G3DSA:1.10.1540.10:FF:000002 WD repeat and FYVE domain containing 3
CDD cd01201 PH_BEACH
SUPERFAMILY SSF48371 ARM repeat
Pfam PF02138 Beige/BEACH domain
Pfam PF14844 PH domain associated with Beige/BEACH
SUPERFAMILY SSF50729 PH domain-like
Gene3D G3DSA:2.130.10.10 -
Gene3D G3DSA:1.10.1540.10 BEACH domain
SMART SM01026 Beach_2
Pfam PF01363 FYVE zinc finger
SUPERFAMILY SSF49899 Concanavalin A-like lectins/glucanases
Pfam PF00400 WD domain, G-beta repeat
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature.
SUPERFAMILY SSF81837 BEACH domain
KEGG K22262 WD repeat and FYVE domain-containing protein 3
KOG KOG1788 Uncharacterized conserved protein; [S]
KOG KOG1786 Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins; [TU]
KOG KOG1409 Uncharacterized conserved protein, contains WD40 repeats and FYVE domains; N-term missing; [S]
MapolyID Mapoly0082s0083 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSPIRRIG Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g15880.1 chr2:17684810..17705150 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.