Mp2g16090



Description

Annotation

Database ID Description
SMART SM00091 pas_2
SMART SM00065 gaf_1
FunFam G3DSA:3.30.450.270:FF:000001 Phytochrome
NCBIfam TIGR00229 PAS domain S-box protein
SUPERFAMILY SSF55781 GAF domain-like
ProSiteProfiles PS50109 Histidine kinase domain profile.
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
FunFam G3DSA:3.30.450.20:FF:000034 Phytochrome
ProSiteProfiles PS50112 PAS repeat profile.
Gene3D G3DSA:3.30.450.40 -
PANTHER PTHR47876 OS08G0260000 PROTEIN
Pfam PF00989 PAS fold
CDD cd16932 HATPase_Phy-like
CDD cd00130 PAS
Pfam PF00360 Phytochrome region
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
Pfam PF00512 His Kinase A (phospho-acceptor) domain
CDD cd00082 HisKA
Gene3D G3DSA:1.10.287.130 -
Gene3D G3DSA:3.30.450.20 PAS domain
Pfam PF08446 PAS fold
PIRSF PIRSF000084 Phytochrome_conventional
ProSiteProfiles PS50046 Phytochrome chromophore attachment site domain profile.
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Pfam PF01590 GAF domain
SMART SM00387 HKATPase_4
Gene3D G3DSA:3.30.565.10 -
Gene3D G3DSA:3.30.450.270 -
FunFam G3DSA:3.30.450.20:FF:000039 Phytochrome
PRINTS PR01033 Phytochrome signature
ProSiteProfiles PS50113 PAC domain profile.
SMART SM00388 HisKA_10
ProSitePatterns PS00245 Phytochrome chromophore attachment site signature.
KEGG K12121 phytochrome B
KOG KOG0519 Sensory transduction histidine kinase; N-term missing; C-term missing; [T]
MapolyID Mapoly0122s0054 -

Nomenclature

Gene symbol Product Transcript ID Status
MpPHY Red light/Far-red light receptor PHYTOCHROME Published

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g16090.1 chr2:18418126..18424396 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.