Mp2g25720



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF55550 SH2 domain
CDD cd09918 SH2_Nterm_SPT6_like
Pfam PF14639 Holliday-junction resolvase-like of SPT6
Gene3D G3DSA:1.10.150.850 -
FunFam G3DSA:1.10.10.2740:FF:000002 Transcription elongation factor Spt6
Gene3D G3DSA:1.10.10.2740 -
SUPERFAMILY SSF47781 RuvA domain 2-like
Gene3D G3DSA:1.10.10.650 -
Pfam PF21710 Spt6, S1/OB domain
CDD cd00164 S1_like
SUPERFAMILY SSF50249 Nucleic acid-binding proteins
FunFam G3DSA:3.30.505.10:FF:000050 Transcription elongation factor spt6
Pfam PF14632 Acidic N-terminal SPT6
FunFam G3DSA:3.30.505.10:FF:000047 Transcription elongation factor spt6
Coils Coil Coil
SMART SM00732 rnase_8s
Pfam PF14633 SH2 domain
PANTHER PTHR10145 TRANSCRIPTION ELONGATION FACTOR SPT6
CDD cd09928 SH2_Cterm_SPT6_like
Gene3D G3DSA:3.30.505.10 SH2 domain
SUPERFAMILY SSF158832 Tex N-terminal region-like
Pfam PF14635 Helix-hairpin-helix motif
Pfam PF17674 HHH domain
Gene3D G3DSA:3.30.420.140 -
Pfam PF14641 Helix-turn-helix DNA-binding domain of SPT6
SUPERFAMILY SSF53098 Ribonuclease H-like
ProSiteProfiles PS50126 S1 domain profile.
Gene3D G3DSA:1.10.3500.10 -
SMART SM00316 S1_6
Gene3D G3DSA:2.40.50.140 -
KEGG K11292 transcription elongation factor SPT6
KOG KOG1856 Transcription elongation factor SPT6; [A]
KOG KOG2992 Nucleolar GTPase/ATPase p130; C-term missing; [Y]
KOG KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins; N-term missing; [A]
MapolyID Mapoly0025s0106 -

Nomenclature

Gene symbol Product Transcript ID Status
MpHC1 Chromatin related protein Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g25720.1 chr2:31577781..31589684 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.