Mp4g02060



Description

Annotation

Database ID Description
Pfam PF00628 PHD-finger
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
FunFam G3DSA:3.30.40.10:FF:000650 Homeobox protein HAT3.1
ProSitePatterns PS01359 Zinc finger PHD-type signature.
Gene3D G3DSA:1.10.10.60 -
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
PANTHER PTHR12628 POLYCOMB-LIKE TRANSCRIPTION FACTOR
ProSiteProfiles PS50071 'Homeobox' domain profile.
Pfam PF00046 Homeodomain
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
CDD cd00086 homeodomain
CDD cd15504 PHD_PRHA_like
SMART SM00389 HOX_1
SMART SM00249 PHD_3
SUPERFAMILY SSF46689 Homeodomain-like
KOG KOG4299 PHD Zn-finger protein; C-term missing; [R]
KOG KOG0774 Transcription factor PBX and related HOX domain proteins; N-term missing; C-term missing; [K]
MapolyID Mapoly0080s0093 -

Nomenclature

Gene symbol Product Transcript ID Status
MpHD15 transcription factor, HD, homeodomain protein Published
MpPHD transcription factor, HD, homeodomain protein Published

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g02060.1 chr4:2682131..2702499 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g02060.2 chr4:2682207..2699818 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.