Mp5g16950



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.60.120.650 Cupin
ProSiteProfiles PS51667 WRC domain profile.
SMART SM00558 cupin_9
Pfam PF02373 JmjC domain, hydroxylase
PANTHER PTHR12549 JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN
ProSiteProfiles PS51184 JmjC domain profile.
Pfam PF10497 Zinc-finger domain of monoamine-oxidase A repressor R1
Pfam PF08879 WRC
SUPERFAMILY SSF51197 Clavaminate synthase-like
ProSiteProfiles PS50007 Phosphatidylinositol-specific phospholipase X-box domain profile.
ProSiteProfiles PS50089 Zinc finger RING-type profile.
KEGG K15601 [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65]
KOG KOG1356 Putative transcription factor 5qNCA, contains JmjC domain; [K]
MapolyID Mapoly0117s0011 -

Nomenclature

Gene symbol Product Transcript ID Status
MpHDM6 Chromatin related protein Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g16950.1 chr5:20965808..20982495 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g16950.2 chr5:20965698..20982635 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.