Mp5g20500



Description

Annotation

Database ID Description
Gene3D G3DSA:2.130.10.10 -
SMART SM00800 uDENN_cls
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
Pfam PF02141 DENN (AEX-3) domain
Gene3D G3DSA:3.40.50.11500 -
PRINTS PR00320 G protein beta WD-40 repeat signature
ProSiteProfiles PS50211 Tripartite DENN domain profile.
SMART SM00320 WD40_4
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
Pfam PF00400 WD domain, G-beta repeat
SMART SM00801 dDENN_cls
Pfam PF03456 uDENN domain
SUPERFAMILY SSF50978 WD40 repeat-like
Gene3D G3DSA:3.30.450.200 -
MobiDBLite mobidb-lite consensus disorder prediction
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature.
PANTHER PTHR12296 DENN DOMAIN-CONTAINING PROTEIN 4
CDD cd00200 WD40
SMART SM00799 DENN_cls
KOG KOG0274 Cdc4 and related F-box and WD-40 proteins; N-term missing; [R]
KOG KOG3569 RAS signaling inhibitor ST5; [T]
KOG KOG0643 Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1); C-term missing; [JT]
MapolyID Mapoly0058s0028 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSCD Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g20500.1 chr5:25967321..25982658 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.