Mp5g24460



Description

Annotation

Database ID Description
SUPERFAMILY SSF54160 Chromo domain-like
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.40.50.10810 -
Pfam PF00628 PHD-finger
CDD cd18660 CD1_tandem
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
CDD cd15532 PHD2_CHD_II
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
Gene3D G3DSA:1.10.10.60 -
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SMART SM00298 chromo_7
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF06461 CHD subfamily II, SANT-like domain
SMART SM01146 DUF1086_2
Pfam PF07432 Histone H1-like protein Hc1
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
CDD cd18659 CD2_tandem
Pfam PF00271 Helicase conserved C-terminal domain
Pfam PF00176 SNF2-related domain
SMART SM00490 helicmild6
SMART SM00249 PHD_3
Pfam PF06465 CHD subfamily II, DUF1087
SMART SM00487 ultradead3
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
Gene3D G3DSA:3.40.50.300 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:2.40.50.40 -
ProSitePatterns PS01359 Zinc finger PHD-type signature.
CDD cd18793 SF2_C_SNF
KOG KOG0384 Chromodomain-helicase DNA-binding protein; [K]
KOG KOG0825 PHD Zn-finger protein; C-term missing; [R]
MapolyID Mapoly0010s0012 -

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.17 Chromatin related protein Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g24460.1 chr5:31146578..31171217 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g24460.2 chr5:31146578..31171217 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g24460.3 chr5:31146578..31171217 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.