Mp6g21420



Description

Annotation

Database ID Description
PANTHER PTHR12620 U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00356 c3hfinal6
Pfam PF00076 RNA recognition motif
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
SMART SM00361 rrm2_1
SUPERFAMILY SSF54928 RNA-binding domain, RBD
PRINTS PR01848 U2 auxiliary factor small subunit signature
SMART SM00360 rrm1_1
Gene3D G3DSA:3.30.70.330 -
FunFam G3DSA:3.30.70.330:FF:000122 Splicing factor U2AF small subunit
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
KEGG K12836 splicing factor U2AF 35 kDa subunit
KOG KOG2202 U2 snRNP splicing factor, small subunit, and related proteins; [A]
MapolyID Mapoly0091s0013 -

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H26 transcription factor, C3H Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g21420.1 chr6:27726579..27731796 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g21420.2 chr6:27726579..27731796 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g21420.3 chr6:27726579..27731628 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.