Mp7g07410



Description

Annotation

Database ID Description
CDD cd15843 R-SNARE
PANTHER PTHR21136 SNARE PROTEINS
FunFam G3DSA:1.20.5.110:FF:000047 Vesicle-associated membrane protein 727
Pfam PF13774 Regulated-SNARE-like domain
FunFam G3DSA:3.30.450.50:FF:000014 vesicle-associated membrane protein 727
Pfam PF00957 Synaptobrevin
Coils Coil Coil
CDD cd14824 Longin
Gene3D G3DSA:1.20.5.110 -
PRINTS PR00219 Synaptobrevin signature
ProSiteProfiles PS50859 Longin domain profile.
ProSiteProfiles PS50892 v-SNARE coiled-coil homology domain profile.
SUPERFAMILY SSF58038 SNARE fusion complex
SMART SM01270 Longin_2
ProSitePatterns PS00417 Synaptobrevin signature.
Gene3D G3DSA:3.30.450.50 Longin domain
SUPERFAMILY SSF64356 SNARE-like
KEGG K08511 vesicle-associated membrane protein 72
KOG KOG0859 Synaptobrevin/VAMP-like protein; [U]
MapolyID Mapoly0076s0053 -

Nomenclature

Gene symbol Product Transcript ID Status
MpVAMP72A.1 Ortholog of Arabidopsis VAMP72 genes Published
MpVAMP72A.1 Ortholog of Arabidopsis VAMP72 genes Published
MpVAMP72A.2 Ortholog of Arabidopsis VAMP72 genes Published

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g07410.1 chr7:10345229..10348326 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp7g07410.2 chr7:10344660..10348326 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp7g07410.3 chr7:10345759..10348326 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.