Mp7g12090



Description

Annotation

Database ID Description
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile.
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR14950 DICER-RELATED
Gene3D G3DSA:3.40.50.300 -
Pfam PF14709 double strand RNA binding domain from DEAD END PROTEIN 1
Pfam PF00035 Double-stranded RNA binding motif
SMART SM00949 PAZ_2_a_3
Gene3D G3DSA:3.30.160.20 -
Coils Coil Coil
SUPERFAMILY SSF54768 dsRNA-binding domain-like
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SMART SM00535 riboneu5
FunFam G3DSA:1.10.1520.10:FF:000004 Endoribonuclease dicer-like 1
CDD cd18034 DEXHc_dicer
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Pfam PF00270 DEAD/DEAH box helicase
FunFam G3DSA:3.30.160.20:FF:000032 endoribonuclease Dicer homolog 1
Gene3D G3DSA:3.30.160.380 Dicer dimerisation domain
CDD cd00593 RIBOc
SUPERFAMILY SSF69065 RNase III domain-like
SMART SM00487 ultradead3
Gene3D G3DSA:1.10.1520.10 Ribonuclease III domain
FunFam G3DSA:3.30.160.380:FF:000001 Endoribonuclease dicer-like 1
FunFam G3DSA:3.40.50.300:FF:000420 Endoribonuclease dicer-like 1
ProSitePatterns PS00517 Ribonuclease III family signature.
SMART SM00490 helicmild6
Pfam PF00636 Ribonuclease III domain
Gene3D G3DSA:2.170.260.10 paz domain
ProSiteProfiles PS51327 Dicer double-stranded RNA-binding fold domain profile.
SMART SM00358 DRBM_3
Pfam PF02170 PAZ domain
CDD cd18802 SF2_C_dicer
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS50142 Ribonuclease III family domain profile.
CDD cd19869 DSRM_DCL_plant
SUPERFAMILY SSF101690 PAZ domain
ProSiteProfiles PS50821 PAZ domain profile.
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
FunFam G3DSA:1.10.1520.10:FF:000007 Endoribonuclease dicer-like protein
Pfam PF03368 Dicer dimerisation domain
FunFam G3DSA:3.40.50.300:FF:000705 Endoribonuclease dicer-like protein
KEGG K11592 endoribonuclease Dicer [EC:3.1.26.-]
KOG KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases; [A]
KOG KOG3732 Staufen and related double-stranded-RNA-binding proteins; C-term missing; [UK]
KOG KOG0670 U4/U6-associated splicing factor PRP4; C-term missing; [A]
MapolyID Mapoly0003s0222 -

Nomenclature

Gene symbol Product Transcript ID Status
MpDCL1b miRNA biogenesis protein Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g12090.1 chr7:15347794..15363942 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.