Mp8g17910



Description

Annotation

Database ID Description
CDD cd16100 ARID
PANTHER PTHR10694 LYSINE-SPECIFIC DEMETHYLASE
Pfam PF02928 C5HC2 zinc finger
SMART SM01014 ARID_2
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00501 bright_3
Pfam PF01388 ARID/BRIGHT DNA binding domain
SMART SM00249 PHD_3
Gene3D G3DSA:2.60.120.650 Cupin
ProSitePatterns PS01359 Zinc finger PHD-type signature.
Pfam PF08429 PLU-1-like protein
ProSiteProfiles PS51183 JmjN domain profile.
Pfam PF21323 Lysine-specific demethylase 5, C-terminal helical domain
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
SUPERFAMILY SSF46774 ARID-like
ProSiteProfiles PS51011 ARID domain profile.
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
SMART SM00545 JmjN_1
SUPERFAMILY SSF51197 Clavaminate synthase-like
CDD cd15543 PHD_RSF1
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
SMART SM00558 cupin_9
ProSiteProfiles PS51184 JmjC domain profile.
Pfam PF00628 PHD-finger
Pfam PF02375 jmjN domain
Pfam PF02373 JmjC domain, hydroxylase
KEGG K11446 [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
KOG KOG1246 DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; C-term missing; [R]
KOG KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain; N-term missing; C-term missing; [K]
KOG KOG1973 Chromatin remodeling protein, contains PHD Zn-finger; N-term missing; [B]
KOG KOG0958 DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily; C-term missing; [L]
KOG KOG0994 Extracellular matrix glycoprotein Laminin subunit beta; N-term missing; [W]
KOG KOG0383 Predicted helicase; C-term missing; [R]
MapolyID Mapoly0030s0125 -

Nomenclature

Gene symbol Product Transcript ID Status
MpARID2 transcription factor, ARID Published

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v6.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g17910.1 chr8:22839006..22861017 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.