Mp1g04040



Description

Annotation

Database ID Description
KEGG K18754 LIN28; protein lin-28
KOG KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing; N-term missing; C-term missing; [J]
Pfam PF00098 Zinc knuckle
Pfam PF00313 'Cold-shock' DNA-binding domain
Gene3D G3DSA:2.40.50.140 -
Gene3D G3DSA:4.10.60.10 -
ProSiteProfiles PS50158 Zinc finger CCHC-type profile.
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00343 -
CDD cd04458 CSP_CDS
SUPERFAMILY SSF57756 -
SUPERFAMILY SSF50249 -
SMART SM00357 -
ProSitePatterns PS00352 'Cold-shock' domain signature.
PRINTS PR00050 Cold shock protein signature
MapolyID Mapoly0005s0203.1

Nomenclature

Gene symbol Product Transcript ID Status
MpCSD transcription factor, CSD Public

Transcript models

Transcript ID Location Sequences Extract region
Mp1g04040.1 chr1:4397406..4400110 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.