Mp4g00040



Description

Annotation

Database ID Description
KOG KOG0384 Chromodomain-helicase DNA-binding protein; C-term missing; [K]
SMART SM00490 -
Gene3D G3DSA:3.40.50.300 -
Gene3D G3DSA:2.40.50.40 -
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
ProSiteProfiles PS50812 PWWP domain profile.
SUPERFAMILY SSF57903 -
SUPERFAMILY SSF54160 -
SMART SM00249 -
ProSitePatterns PS01359 Zinc finger PHD-type signature.
Pfam PF00628 PHD-finger
Pfam PF00176 SNF2 family N-terminal domain
CDD cd15532 PHD2_CHD_II
Gene3D G3DSA:3.40.50.10810 -
CDD cd00024 CHROMO
CDD cd00079 HELICc
SUPERFAMILY SSF46689 -
Pfam PF06465 Domain of Unknown Function (DUF1087)
CDD cd00046 DEXDc
CDD cd11660 SANT_TRF
Gene3D G3DSA:1.20.920.10 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
SUPERFAMILY SSF52540 -
Gene3D G3DSA:3.30.40.10 -
Gene3D G3DSA:1.10.10.60 -
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
Pfam PF00855 PWWP domain
SMART SM00487 -
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
SMART SM00298 -
Pfam PF00271 Helicase conserved C-terminal domain
SUPERFAMILY SSF63748 -
SMART SM01147 -
ProSiteProfiles PS50090 Myb-like domain profile.
SMART SM00184 -
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
Gene3D G3DSA:2.30.30.140 -
MapolyID Mapoly0162s0017.1

Nomenclature

Gene symbol Product Transcript ID Status
Mp1R-MYB20 transcription factor, MYB Public

Transcript models

Transcript ID Location Sequences Extract region
Mp4g00040.1 chr4:65362..85887 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.