Mp1g04040



Description

Annotation

Database ID Description
KOG KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing; N-term missing; C-term missing; [J]
CDD cd04458 CSP_CDS
Pfam PF00098 Zinc knuckle
ProSitePatterns PS00352 Cold-shock (CSD) domain signature.
Pfam PF00313 'Cold-shock' DNA-binding domain
ProSiteProfiles PS50158 Zinc finger CCHC-type profile.
SMART SM00343 c2hcfinal6
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains
PANTHER PTHR46565 COLD SHOCK DOMAIN PROTEIN 2
SUPERFAMILY SSF50249 Nucleic acid-binding proteins
PRINTS PR00050 Cold shock protein signature
Gene3D G3DSA:2.40.50.140 -
Gene3D G3DSA:4.10.60.10 -
SMART SM00357 csp_8
ProSiteProfiles PS51857 Cold-shock (CSD) domain profile.
GO GO:0003676 nucleic acid binding
GO GO:0008270 zinc ion binding
MapolyID Mapoly0005s0203 -

Nomenclature

Gene symbol Product Transcript ID Status
MpCSD transcription factor, CSD Published

Transcript models

Transcript ID Location Sequences Extract region
Mp1g04040.1 chr1:4397406..4400110 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.