Mp3g15030



Description

Annotation

Database ID Description
KEGG K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:3.6.4.-]
KOG KOG0385 Chromatin remodeling complex WSTF-ISWI, small subunit; [K]
Gene3D G3DSA:1.10.10.60 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
PANTHER PTHR10799:SF986 OS05G0150300 PROTEIN
SUPERFAMILY SSF46689 Homeodomain-like
Coils Coil Coil
CDD cd00167 SANT
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd18793 SF2_C_SNF
Pfam PF09111 SLIDE
SMART SM00717 sant
SMART SM00490 helicmild6
CDD cd17997 DEXHc_SMARCA1_SMARCA5
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF00271 Helicase conserved C-terminal domain
Gene3D G3DSA:3.40.50.300 -
Pfam PF09110 HAND
ProSiteProfiles PS51293 SANT domain profile.
Gene3D G3DSA:1.10.1040.30 -
PANTHER PTHR10799 SNF2/RAD54 HELICASE FAMILY
SUPERFAMILY SSF101224 HAND domain of the nucleosome remodeling ATPase ISWI
Gene3D G3DSA:3.40.50.10810 -
SMART SM00487 ultradead3
Pfam PF00176 SNF2 family N-terminal domain
GO GO:0005634 nucleus
GO GO:0003676 nucleic acid binding
GO GO:0006338 chromatin remodeling
GO GO:0031491 nucleosome binding
GO GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO GO:0043044 ATP-dependent chromatin remodeling
GO GO:0070615 nucleosome-dependent ATPase activity
GO GO:0005524 ATP binding
MapolyID Mapoly0004s0169 -

Nomenclature

Gene symbol Product Transcript ID Status
Mp1R-MYB1 transcription factor, MYB Published

Transcript models

Transcript ID Location Sequences Extract region
Mp3g15030.1 chr3:14621404..14635443 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.