Mp4g00040



Description

Annotation

Database ID Description
KOG KOG0384 Chromodomain-helicase DNA-binding protein; C-term missing; [K]
KOG KOG4299 PHD Zn-finger protein; C-term missing; [R]
ProSiteProfiles PS50812 PWWP domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00628 PHD-finger
ProSitePatterns PS01359 Zinc finger PHD-type signature.
Gene3D G3DSA:1.20.920.10 Histone Acetyltransferase; Chain A
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
SUPERFAMILY SSF63748 Tudor/PWWP/MBT
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
PANTHER PTHR45623:SF28 PROTEIN CHROMATIN REMODELING 4
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SMART SM00298 chromo_7
Pfam PF00855 PWWP domain
SUPERFAMILY SSF54160 Chromo domain-like
Pfam PF06465 Domain of Unknown Function (DUF1087)
CDD cd11660 SANT_TRF
Gene3D G3DSA:2.40.50.40 -
SUPERFAMILY SSF46689 Homeodomain-like
CDD cd15532 PHD2_CHD_II
Pfam PF00176 SNF2 family N-terminal domain
Gene3D G3DSA:3.40.50.10810 -
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
CDD cd18660 CD1_tandem
SMART SM00249 PHD_3
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
CDD cd18659 CD2_tandem
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain
ProSiteProfiles PS50090 Myb-like domain profile.
Pfam PF00271 Helicase conserved C-terminal domain
SMART SM00490 helicmild6
CDD cd18793 SF2_C_SNF
Gene3D G3DSA:3.40.50.300 -
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
SMART SM00487 ultradead3
Gene3D G3DSA:2.30.30.140 -
Gene3D G3DSA:1.10.10.60 -
SMART SM00184 ring_2
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
SMART SM01147 DUF1087_2
GO GO:0070615 nucleosome-dependent ATPase activity
GO GO:0005524 ATP binding
GO GO:0005515 protein binding
MapolyID Mapoly0162s0017 -

Nomenclature

Gene symbol Product Transcript ID Status
Mp1R-MYB20 transcription factor, MYB Published

Transcript models

Transcript ID Location Sequences Extract region
Mp4g00040.1 chr4:65362..85887 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.