Mp5g12010



Description

Annotation

Database ID Description
KEGG K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
KOG KOG0277 Peroxisomal targeting signal type 2 receptor; N-term missing; [U]
KOG KOG0297 TNF receptor-associated factor; C-term missing; [T]
Coils Coil Coil
CDD cd16504 RING-HC_COP1
SMART SM00504 Ubox_2
SMART SM00184 ring_2
Pfam PF00400 WD domain, G-beta repeat
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
PRINTS PR00320 G protein beta WD-40 repeat signature
ProSitePatterns PS00518 Zinc finger RING-type signature.
PANTHER PTHR44080:SF2 E3 UBIQUITIN-PROTEIN LIGASE COP1
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
Pfam PF13923 Zinc finger, C3HC4 type (RING finger)
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain
SUPERFAMILY SSF50978 WD40 repeat-like
SUPERFAMILY SSF57850 RING/U-box
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00320 WD40_4
Gene3D G3DSA:2.130.10.10 -
ProSiteProfiles PS50089 Zinc finger RING-type profile.
PANTHER PTHR44080 E3 UBIQUITIN-PROTEIN LIGASE COP1
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature.
GO GO:0004842 ubiquitin-protein transferase activity
GO GO:0061630 ubiquitin protein ligase activity
GO GO:0005515 protein binding
GO GO:0016567 protein ubiquitination
MapolyID Mapoly0143s0030 -

Nomenclature

Gene symbol Product Transcript ID Status
MpCOP1 A RING finger E3 ubiquitin ligase Published

Transcript models

Transcript ID Location Sequences Extract region
Mp5g12010.1 chr5:13143321..13149549 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g12010.2 chr5:13143132..13149565 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.