Mp8g16760



Description

Annotation

Database ID Description
KEGG K09272 SSRP1; structure-specific recognition protein 1
KOG KOG0526 Nucleosome-binding factor SPN, POB3 subunit; [KLB]
SUPERFAMILY SSF50729 PH domain-like
PRINTS PR00887 Structure-specific recognition protein signature
Pfam PF03531 Structure-specific recognition protein (SSRP1)
Gene3D G3DSA:1.10.30.10 DNA Binding (I)
PANTHER PTHR45849 FACT COMPLEX SUBUNIT SSRP1
Pfam PF08512 Histone chaperone Rttp106-like
Gene3D G3DSA:2.30.29.220 -
ProSiteProfiles PS50118 HMG boxes A and B DNA-binding domains profile.
PANTHER PTHR45849:SF2 FACT COMPLEX SUBUNIT SSRP1-B
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00398 hmgende2
Gene3D G3DSA:2.30.29.30 -
SUPERFAMILY SSF47095 HMG-box
Gene3D G3DSA:2.30.29.150 -
CDD cd13231 PH2_SSRP1-like
SMART SM01287 Rtt106_2
Pfam PF00505 HMG (high mobility group) box
CDD cd01390 HMGB-UBF_HMG-box
CDD cd13230 PH1_SSRP1-like
Pfam PF17292 POB3-like N-terminal PH domain
GO GO:0005634 nucleus
GO GO:0003677 DNA binding
MapolyID Mapoly0030s0009 -

Nomenclature

Gene symbol Product Transcript ID Status
MpHMGBOX3 transcription factor, HMG-box Published

Transcript models

Transcript ID Location Sequences Extract region
Mp8g16760.1 chr8:18789187..18796794 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g16760.2 chr8:18790031..18796794 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.