Mp8g17910



Description

Annotation

Database ID Description
KEGG K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
KOG KOG1246 DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; C-term missing; [R]
Pfam PF08429 PLU-1-like protein
MobiDBLite mobidb-lite consensus disorder prediction
ProSitePatterns PS01359 Zinc finger PHD-type signature.
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
Pfam PF02375 jmjN domain
SUPERFAMILY SSF51197 Clavaminate synthase-like
CDD cd16100 ARID
ProSiteProfiles PS51183 JmjN domain profile.
SUPERFAMILY SSF46774 ARID-like
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
Pfam PF01388 ARID/BRIGHT DNA binding domain
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain
SMART SM00249 PHD_3
Gene3D G3DSA:1.10.150.60 -
PANTHER PTHR10694:SF8 LYSINE-SPECIFIC DEMETHYLASE LID
Pfam PF02373 JmjC domain, hydroxylase
Gene3D G3DSA:2.60.120.650 Cupin
SMART SM00558 cupin_9
SMART SM01014 ARID_2
SMART SM00501 bright_3
SMART SM00545 JmjN_1
CDD cd15543 PHD_RSF1
ProSiteProfiles PS51184 JmjC domain profile.
Pfam PF02928 C5HC2 zinc finger
Pfam PF00628 PHD-finger
PANTHER PTHR10694 LYSINE-SPECIFIC DEMETHYLASE
ProSiteProfiles PS51011 ARID domain profile.
GO GO:0003677 DNA binding
MapolyID Mapoly0030s0125 -

Nomenclature

Gene symbol Product Transcript ID Status
MpARID2 transcription factor, ARID Published

Transcript models

Transcript ID Location Sequences Extract region
Mp8g17910.1 chr8:20072281..20094630 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.