MpVg00300



Description

Annotation

Database ID Description
KEGG K13464 jasmonate ZIM domain-containing protein
KOG KOG1601 GATA-4/5/6 transcription factors; N-term missing; C-term missing; [K]
Pfam PF06203 CCT motif
SUPERFAMILY SSF57716 Glucocorticoid receptor-like (DNA-binding domain)
SMART SM00979 tify_2
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS51017 CCT domain profile.
ProSiteProfiles PS51320 Tify domain profile.
SMART SM00401 GATA_3
Gene3D G3DSA:3.30.50.10 -
Pfam PF06200 tify domain
PANTHER PTHR46125:SF5 GATA TRANSCRIPTION FACTOR 28
CDD cd00202 ZnF_GATA
Pfam PF00320 GATA zinc finger
PANTHER PTHR46125 GATA TRANSCRIPTION FACTOR 28
ProSitePatterns PS00344 GATA-type zinc finger domain.
ProSiteProfiles PS50114 GATA-type zinc finger domain profile.
MapolyID MapolyY_B0021 -

Nomenclature

Gene symbol Product Transcript ID Status
MpGATA6 transcription factor, GATA Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
MpVg00300.1 chrV:1475386..1502156 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
MpVg00300.2 chrV:1475386..1502156 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.