Mp1g04040



Description

Annotation

Database ID Description
KEGG K18754 LIN28; protein lin-28
KOG KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing; N-term missing; C-term missing; [J]
Pfam PF00098 Zinc knuckle
Pfam PF00313 'Cold-shock' DNA-binding domain
Gene3D G3DSA:2.40.50.140 -
Gene3D G3DSA:4.10.60.10 -
ProSiteProfiles PS50158 Zinc finger CCHC-type profile.
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00343 -
CDD cd04458 CSP_CDS
SUPERFAMILY SSF57756 -
SUPERFAMILY SSF50249 -
SMART SM00357 -
ProSitePatterns PS00352 'Cold-shock' domain signature.
PRINTS PR00050 Cold shock protein signature
MapolyID Mapoly0005s0203.1
GO GO:0008270 zinc ion binding
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpCSD transcription factor, CSD Public

Transcript models

Transcript ID Location Sequences Extract region
Mp1g04040.1 chr1:4397406..4400110 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.