| Database | ID | Description |
|---|---|---|
| KEGG | K11131 | DKC1, NOLA4, CBF5; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] |
| KOG | KOG2529 | Pseudouridine synthase; [J] |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| SUPERFAMILY | SSF55120 | - |
| Pfam | PF16198 | tRNA pseudouridylate synthase B C-terminal domain |
| Gene3D | G3DSA:3.30.2350.10 | - |
| SMART | SM01136 | - |
| Pfam | PF01472 | PUA domain |
| ProSiteProfiles | PS50890 | PUA domain profile. |
| Pfam | PF08068 | DKCLD (NUC011) domain |
| CDD | cd02572 | PseudoU_synth_hDyskerin |
| TIGRFAM | TIGR00425 | CBF5: putative rRNA pseudouridine synthase |
| TIGRFAM | TIGR00451 | unchar_dom_2: uncharacterized domain 2 |
| Gene3D | G3DSA:2.30.130.70 | - |
| Pfam | PF01509 | TruB family pseudouridylate synthase (N terminal domain) |
| SMART | SM00359 | - |
| SUPERFAMILY | SSF88697 | - |
| Coils | Coil | - |
| MapolyID | Mapoly0138s0004 | |
| GO | GO:0006396 | RNA processing |
| GO | GO:0009982 | pseudouridine synthase activity |
| GO | GO:0003723 | RNA binding |
| GO | GO:0009451 | RNA modification |
| GO | GO:0001522 | pseudouridine synthesis |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpCBF5 | transcription factor, CBF5 | Published |
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g12650.1 ATGGCGAGCG CGGAAAAGAA GAAGAAGAAG AGAGACAAGG GAGAGAAAAA CGGGGTGGAG GAGGATGGGG CCATCGTGAC TGCAGGTGCA GCTGGTCTTG ATCAAGCGAG TATCGATTTC TTGATCAAGC CCCAGAGTTC GACCCCTGCA TTGGACACCT CGCAATGGCC GATTTTGCTC AAGAATTACG ACAAGCTCAA CATTCGAACT GGACACTATA CCCCCATTCC CACCGGGCAT TCTCCGTTGA AACGGCCTCT GTTCGATTAC GTACGGTACG GTGTGATCAA TCTGGATAAG CCCGCCAACC CTTCTTCCCA CGAGGTCGTC GCGTGGATTA GGAGAATATT GAGGGTCGAC AAGACCGGAC ACAGTGGTAC TTTGGATCCG AAGGTCACAG GTAGTCTAAT CGTTTGTGTA GACAGGGCAA CTCGGCTCGT GAAAGCTCAA CAAGGAGCTG GGAAGGAGTA CGTTTGTGTA GCTCGCCTTC ACTCCGCAGT CGACAATGTT GCCAAGGTCG CTCGAGCTAT CGAAACCCTG ACCGGTGCTT TGTTCCAAAG ACCTCCTCTG ATTTCTGCCG TGAAGAGGCA GCTCAGGATT AGGACAATCT ACCAAAGTAA GTTGCTGGAA TATGACGCCG AGCGCCACTT GGTGGTGTTT TGGGTTTCCT GCGAGGCGGG AACTTACATT AGAACTTTGT GTGTTCACTT GGGATTGCTT CTAGGAGTCG GGGGCCATAT GCAGGAGCTG AGGCGTGTGA GGTCAGGTAT TCTGGGAGAG AAGGATAATC TGGTAACGAT GCATGACGTT TTGGATGCTC AATGGCAATT CGATCACAAC CAGGACGAAG CTTATCTCAG ACGAGTTATT ATGCCCCTGG AGGTTCTGCT GACAAGCTAC AAAAGGCTGG TCGTGAAGGA CAGTGCTGTC AATGCCATCT GCTACGGAGC CAAGCTGATG ATTCCAGGTC TCTTACGATT TGAGAACGGA ATTGAAAACG GCGAGGAGGT TGTGCTCATG ACGACCAAGG GCGAGGCAAT CGCATTGGGT GTCGCTCAGA TGACCACCGC CGTAATGGCC ACCTGCGACC ACGGAGTCGT TGCCAAGGTC AAGAGAGTCG TCATGGAGAG GGACACATAT CCCAGGAAAT GGGGTTTGGG ACCTCGCGCA TCCACGAAGA AGAAATTGAT CGCCGATGGG TTGCTGGACA AGAATGGCAG ACCCAACGAG AAAACCCCCG CAGAGTGGCT GAGGAACATC CCTGAGCTCG AAACCATCAC CGTCGCGGCG GGCGAGGACA CAGCGATCGC GAGGGCGGCA GCCGTGGAAG AGCCTTCGAC GGCGAAGCCG AAGAAAGAGG TGAAGGTGAA AGAAGAGCCT GAAGAAGCGC GAGCCGGAGA GAAGAGGAAA GTGTCGGCCG ACGTCGCGAC CCCAGAGCCC GCCGCGAAGA AGAAGAAGCA AAAGACGGAA GACGCCGAAG AGGTCACGGA GGCGGTGATG GAGACGACGA CCCCGAAGAG CGAGAAGAAG AAAAAGAAGA AGGACAAGGA GCAGCACAAG GAGGAAGAGG AGGAGGAGAA TGGTGCGGAC GAGCCCAAGT CCGAGAAGAA GAAGAAGAAG AAGGATAAAT CCGCCGATTT GACGGAGGAA TTGACGGAGA CACCGAAGAG TGAGAAGAAG AAGAAGAAAG ATAAATCCGC GGGTGCGGAG GAGACGGCTG CTGAGGCCGA GGCGCCGAAG AGCGAGAAGA AGAAGAAGAA GAAGAAAGAC GAGGAGTTAT AG |
mRNA UTR + CDS |
| >Mp4g12650.1 ATGGCGAGCG CGGAAAAGAA GAAGAAGAAG AGAGACAAGG GAGAGAAAAA CGGGGTGGAG GAGGATGGGG CCATCGTGAC TGCAGGTGCA GCTGGTCTTG ATCAAGCGAG TATCGATTTC TTGATCAAGC CCCAGAGTTC GACCCCTGCA TTGGACACCT CGCAATGGCC GATTTTGCTC AAGAATTACG ACAAGCTCAA CATTCGAACT GGACACTATA CCCCCATTCC CACCGGGCAT TCTCCGTTGA AACGGCCTCT GTTCGATTAC GTACGGTACG GTGTGATCAA TCTGGATAAG CCCGCCAACC CTTCTTCCCA CGAGGTCGTC GCGTGGATTA GGAGAATATT GAGGGTCGAC AAGACCGGAC ACAGTGGTAC TTTGGATCCG AAGGTCACAG GTAGTCTAAT CGTTTGTGTA GACAGGGCAA CTCGGCTCGT GAAAGCTCAA CAAGGAGCTG GGAAGGAGTA CGTTTGTGTA GCTCGCCTTC ACTCCGCAGT CGACAATGTT GCCAAGGTCG CTCGAGCTAT CGAAACCCTG ACCGGTGCTT TGTTCCAAAG ACCTCCTCTG ATTTCTGCCG TGAAGAGGCA GCTCAGGATT AGGACAATCT ACCAAAGTAA GTTGCTGGAA TATGACGCCG AGCGCCACTT GGTGGTGTTT TGGGTTTCCT GCGAGGCGGG AACTTACATT AGAACTTTGT GTGTTCACTT GGGATTGCTT CTAGGAGTCG GGGGCCATAT GCAGGAGCTG AGGCGTGTGA GGTCAGGTAT TCTGGGAGAG AAGGATAATC TGGTAACGAT GCATGACGTT TTGGATGCTC AATGGCAATT CGATCACAAC CAGGACGAAG CTTATCTCAG ACGAGTTATT ATGCCCCTGG AGGTTCTGCT GACAAGCTAC AAAAGGCTGG TCGTGAAGGA CAGTGCTGTC AATGCCATCT GCTACGGAGC CAAGCTGATG ATTCCAGGTC TCTTACGATT TGAGAACGGA ATTGAAAACG GCGAGGAGGT TGTGCTCATG ACGACCAAGG GCGAGGCAAT CGCATTGGGT GTCGCTCAGA TGACCACCGC CGTAATGGCC ACCTGCGACC ACGGAGTCGT TGCCAAGGTC AAGAGAGTCG TCATGGAGAG GGACACATAT CCCAGGAAAT GGGGTTTGGG ACCTCGCGCA TCCACGAAGA AGAAATTGAT CGCCGATGGG TTGCTGGACA AGAATGGCAG ACCCAACGAG AAAACCCCCG CAGAGTGGCT GAGGAACATC CCTGAGCTCG AAACCATCAC CGTCGCGGCG GGCGAGGACA CAGCGATCGC GAGGGCGGCA GCCGTGGAAG AGCCTTCGAC GGCGAAGCCG AAGAAAGAGA GCGAGAAGAA GAAAAAGAAG AAGGACAAGG AGCAGCACAA GGAGGAAGAG GAGGAGGAGA ATGGTGCGGA CGAGCCCAAG TCCGAGAAGA AGAAGAAGAA GAAGGATAAA TCCGCCGATT TGACGGAGGA ATTGACGGAG ACACCGAAGA GTGAGAAGAA GAAGAAGAAA GATAAATCCG CGGGTGCGGA GGAGACGGCT GCTGAGGCCG AGGCGCCGAA GAGCGAGAAG AAGAAGAAGA AGAAGAAAGA CGAGGAGTTA TAG |
CDS |
| >Mp4g12650.1 ATGGCGAGCG CGGAAAAGAA GAAGAAGAAG AGAGACAAGG GAGAGAAAAA CGGGGTGGAG GAGGATGGGG CCATCGTGAC TGCAGGTGCA GCTGGTCTTG ATCAAGCGAG TATCGATTTC TTGATCAAGC CCCAGAGTTC GACCCCTGCA TTGGACACCT CGCAATGGCC GATTTTGCTC AAGAATTACG ACAAGCTCAA CATTCGAACT GGACACTATA CCCCCATTCC CACCGGGCAT TCTCCGTTGA AACGGCCTCT GTTCGATTAC GTACGGTACG GTGTGATCAA TCTGGATAAG CCCGCCAACC CTTCTTCCCA CGAGGTCGTC GCGTGGATTA GGAGAATATT GAGGGTCGAC AAGACCGGAC ACAGTGGTAC TTTGGATCCG AAGGTCACAG GTAGTCTAAT CGTTTGTGTA GACAGGGCAA CTCGGCTCGT GAAAGCTCAA CAAGGAGCTG GGAAGGAGTA CGTTTGTGTA GCTCGCCTTC ACTCCGCAGT CGACAATGTT GCCAAGGTCG CTCGAGCTAT CGAAACCCTG ACCGGTGCTT TGTTCCAAAG ACCTCCTCTG ATTTCTGCCG TGAAGAGGCA GCTCAGGATT AGGACAATCT ACCAAAGTAA GTTGCTGGAA TATGACGCCG AGCGCCACTT GGTGGTGTTT TGGGTTTCCT GCGAGGCGGG AACTTACATT AGAACTTTGT GTGTTCACTT GGGATTGCTT CTAGGAGTCG GGGGCCATAT GCAGGAGCTG AGGCGTGTGA GGTCAGGTAT TCTGGGAGAG AAGGATAATC TGGTAACGAT GCATGACGTT TTGGATGCTC AATGGCAATT CGATCACAAC CAGGACGAAG CTTATCTCAG ACGAGTTATT ATGCCCCTGG AGGTTCTGCT GACAAGCTAC AAAAGGCTGG TCGTGAAGGA CAGTGCTGTC AATGCCATCT GCTACGGAGC CAAGCTGATG ATTCCAGGTC TCTTACGATT TGAGAACGGA ATTGAAAACG GCGAGGAGGT TGTGCTCATG ACGACCAAGG GCGAGGCAAT CGCATTGGGT GTCGCTCAGA TGACCACCGC CGTAATGGCC ACCTGCGACC ACGGAGTCGT TGCCAAGGTC AAGAGAGTCG TCATGGAGAG GGACACATAT CCCAGGAAAT GGGGTTTGGG ACCTCGCGCA TCCACGAAGA AGAAATTGAT CGCCGATGGG TTGCTGGACA AGAATGGCAG ACCCAACGAG AAAACCCCCG CAGAGTGGCT GAGGAACATC CCTGAGCTCG AAACCATCAC CGTCGCGGCG GGCGAGGACA CAGCGATCGC GAGGGCGGCA GCCGTGGAAG AGCCTTCGAC GGCGAAGCCG AAGAAAGAGA GCGAGAAGAA GAAAAAGAAG AAGGACAAGG AGCAGCACAA GGAGGAAGAG GAGGAGGAGA ATGGTGCGGA CGAGCCCAAG TCCGAGAAGA AGAAGAAGAA GAAGGATAAA TCCGCCGATT TGACGGAGGA ATTGACGGAG ACACCGAAGA GTGAGAAGAA GAAGAAGAAA GATAAATCCG CGGGTGCGGA GGAGACGGCT GCTGAGGCCG AGGCGCCGAA GAGCGAGAAG AAGAAGAAGA AGAAGAAAGA CGAGGAGTTA TAG |
Protein |
| >Mp4g12650.1 MASAEKKKKK RDKGEKNGVE EDGAIVTAGA AGLDQASIDF LIKPQSSTPA LDTSQWPILL KNYDKLNIRT GHYTPIPTGH SPLKRPLFDY VRYGVINLDK PANPSSHEVV AWIRRILRVD KTGHSGTLDP KVTGSLIVCV DRATRLVKAQ QGAGKEYVCV ARLHSAVDNV AKVARAIETL TGALFQRPPL ISAVKRQLRI RTIYQSKLLE YDAERHLVVF WVSCEAGTYI RTLCVHLGLL LGVGGHMQEL RRVRSGILGE KDNLVTMHDV LDAQWQFDHN QDEAYLRRVI MPLEVLLTSY KRLVVKDSAV NAICYGAKLM IPGLLRFENG IENGEEVVLM TTKGEAIALG VAQMTTAVMA TCDHGVVAKV KRVVMERDTY PRKWGLGPRA STKKKLIADG LLDKNGRPNE KTPAEWLRNI PELETITVAA GEDTAIARAA AVEEPSTAKP KKESEKKKKK KDKEQHKEEE EEENGADEPK SEKKKKKKDK SADLTEELTE TPKSEKKKKK DKSAGAEETA AEAEAPKSEK KKKKKKDEEL |