MarpolBase
Genome Database for Marchantia polymorpha
- Gene Fetcher Get gene sequences
- Genome Slicer Extract genomic regions
- Gene ID converter Convert gene IDs between genomes
- Liftover Convert coordinates between genomes
Marchantia Gene Info
Genome Browser
MBEX: Marchantia Expression Database
Gene Nomenclature
[Important notice] To maintain nomenclature consistent and systematic, we strongly recommend that gene names/symbols should be registered before publications and presentations.
Analytical Tools
BLAST similarity search Mp Reference Genome v7.1 (latest)
BLAST similarity search MpTak_v6.1 and earlier
BLAST similarity search JGI 3.1 and plant species (legacy website)
GMAP cDNA mapping/alignment to the Marchantia genome
CasFinder sgRNA designing for the CRISPR/Cas9 system
amiRNA Design Helper target site search for amiRNA gene knockdown
GGGenome Ultrafast genome sequence search (for JGI 3.1)
CRISPRdirect Fast target search for the CRISPR/Cas9 system (for JGI 3.1)
CRISPR-P sgRNA design for CRISPR/Cas9 genome editing in plants (for JGI 3.1)
Utility tools
Marchantia Literature Archives
Download Marchantia Genome Resources
Nov 18-21, 2024, Hiroshima, Japan.
Registration and Abstract submission are open until 10th October, 2024.
Please visit the conference site for more details.
High-quality reference genomes for Tak-1 (MpTak1_v7.1) and Tak-2 (MpTak2_v7.1) and new standard reference genome (MpTak_v7.1) have become available.
Find them at
README
/
Download
Marchantia Pangenome Resources have become available. Please read this for more details.
The new revision of the standard reference genome MpTak_v6.1r2 ( male Tak1 genome + female Tak2 U-chr) has been released. Some of the gene models have been updated and some of the unplaced scaffolds have been removed.
Now MpTak_v6.1r2 is designated as the default genome in MarpolBase.
See README for what has been changed. The genome data is downloadable from here