Mp1g04040



Description

Annotation

Database ID Description
KOG KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing; N-term missing; C-term missing; [J]
CDD cd04458 CSP_CDS
Pfam PF00098 Zinc knuckle
ProSitePatterns PS00352 Cold-shock (CSD) domain signature.
Pfam PF00313 'Cold-shock' DNA-binding domain
ProSiteProfiles PS50158 Zinc finger CCHC-type profile.
SMART SM00343 c2hcfinal6
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains
PANTHER PTHR46565 COLD SHOCK DOMAIN PROTEIN 2
SUPERFAMILY SSF50249 Nucleic acid-binding proteins
PRINTS PR00050 Cold shock protein signature
Gene3D G3DSA:2.40.50.140 -
Gene3D G3DSA:4.10.60.10 -
SMART SM00357 csp_8
ProSiteProfiles PS51857 Cold-shock (CSD) domain profile.
GO GO:0003676 nucleic acid binding
GO GO:0008270 zinc ion binding
MapolyID Mapoly0005s0203 -

Nomenclature

Gene symbol Product Transcript ID Status
MpCSD transcription factor, CSD Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g04040.1 chr1:4397406..4400110 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.