Mp1g25160



Description

Annotation

Database ID Description
KOG KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily); C-term missing; [A]
KOG KOG4318 Bicoid mRNA stability factor; C-term missing; [A]
CDD cd00590 RRM_SF
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile.
Pfam PF01535 PPR repeat
Pfam PF17177 Pentacotripeptide-repeat region of PRORP
Gene3D G3DSA:3.30.70.330 -
PANTHER PTHR47939 MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE
Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SUPERFAMILY SSF81901 HCP-like
Gene3D G3DSA:1.25.40.10 -
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain
SMART SM00360 rrm1_1
SUPERFAMILY SSF54928 RNA-binding domain, RBD
PANTHER PTHR47939:SF1 OS04G0684500 PROTEIN
Pfam PF13041 PPR repeat family
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
GO GO:0003676 nucleic acid binding
GO GO:0005515 protein binding
MapolyID Mapoly0061s0009 -

Nomenclature

Gene symbol Product Transcript ID Status
MpPPR_63 Pentatricopeptide repeat proteins Published

Transcript models

Transcript ID Location Sequences Extract region
Mp1g25160.1 chr1:25683920..25691214 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.