Mp4g13380



Description

Annotation

Database ID Description
KEGG K03086 rpoD; RNA polymerase primary sigma factor
Gene3D G3DSA:1.10.10.10 ""winged helix"" repressor DNA binding domain
MobiDBLite mobidb-lite consensus disorder prediction
PRINTS PR00046 Major sigma-70 factor signature
Pfam PF04542 Sigma-70 region 2
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
ProSitePatterns PS00716 Sigma-70 factors family signature 2.
ProSitePatterns PS00715 Sigma-70 factors family signature 1.
PIRSF PIRSF000767 Sigma_factor_SigC
Pfam PF04539 Sigma-70 region 3
Pfam PF04545 Sigma-70, region 4
CDD cd06171 Sigma70_r4
TIGRFAM TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
PANTHER PTHR30603:SF45 RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC
PANTHER PTHR30603 RNA POLYMERASE SIGMA FACTOR RPO
Pfam PF00140 Sigma-70 factor, region 1.2
Gene3D G3DSA:1.10.601.10 RNA Polymerase Primary Sigma Factor
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors
GO GO:0016987 sigma factor activity
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding
GO GO:0006352 DNA-templated transcription, initiation
GO GO:0006355 regulation of transcription, DNA-templated
MapolyID Mapoly0214s0004 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSIG2 Ortholog of Arabidopsis SIG2 gene Published

Transcript models

Transcript ID Location Sequences Extract region
Mp4g13380.1 chr4:14909151..14913404 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.