Mp5g13160



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF46689 Homeodomain-like
SUPERFAMILY SSF47676 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
SMART SM00389 HOX_1
PANTHER PTHR33400 ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED
CDD cd00086 homeodomain
Gene3D G3DSA:1.10.10.60 -
PANTHER PTHR33400:SF6 HOMEOBOX PROTEIN LUMINIDEPENDENS
GO GO:0003677 DNA binding
MapolyID Mapoly0032s0010 -

Nomenclature

Gene symbol Product Transcript ID Status
MpHD10 transcription factor, HD, homeodomain protein Published
MpLD transcription factor, HD, homeodomain protein Published

Transcript models

Transcript ID Location Sequences Extract region
Mp5g13160.1 chr5:14395769..14411658 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g13160.2 chr5:14390445..14411658 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g13160.3 chr5:14390507..14411658 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.