Mp6g00050



Description

Annotation

Database ID Description
KEGG K08486 STX1B_2_3; syntaxin 1B/2/3
KOG KOG0810 SNARE protein Syntaxin 1 and related proteins; [U]
Coils Coil Coil
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd00179 SynN
SUPERFAMILY SSF47661 t-snare proteins
Gene3D G3DSA:1.20.58.70 -
PANTHER PTHR19957:SF80 SYNTAXIN-121
SMART SM00397 tSNARE_6
CDD cd15848 SNARE_syntaxin1-like
ProSitePatterns PS00914 Syntaxin / epimorphin family signature.
ProSiteProfiles PS50192 t-SNARE coiled-coil homology domain profile.
SMART SM00503 SynN_4
Pfam PF05739 SNARE domain
PANTHER PTHR19957 SYNTAXIN
Pfam PF00804 Syntaxin
GO GO:0016192 vesicle-mediated transport
GO GO:0005484 SNAP receptor activity
GO GO:0016020 membrane
GO GO:0006886 intracellular protein transport
MapolyID Mapoly0163s0015 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSYP12A Common ortholog of both Arabidopsis SYP11 and SYP12 genes Published

Transcript models

Transcript ID Location Sequences Extract region
Mp6g00050.1 chr6:92478..95022 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.