| Database | ID | Description |
|---|---|---|
| KEGG | K14485 | TIR1; transport inhibitor response 1 |
| KOG | KOG1947 | Leucine rich repeat proteins, some proteins contain F-box; [R] |
| Pfam | PF18511 | F-box |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor |
| PANTHER | PTHR16134 | F-BOX/TPR REPEAT PROTEIN POF3 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain |
| SUPERFAMILY | SSF52047 | RNI-like |
| Pfam | PF13516 | Leucine Rich repeat |
| Gene3D | G3DSA:1.20.1280.50 | - |
| PANTHER | PTHR16134:SF37 | PROTEIN AUXIN SIGNALING F-BOX 3-LIKE |
| SUPERFAMILY | SSF81383 | F-box domain |
| SMART | SM00256 | fbox_2 |
| SMART | SM00367 | LRR_CC_2 |
| SUPERFAMILY | SSF52058 | L domain-like |
| GO | GO:0005515 | protein binding |
| MapolyID | Mapoly0035s0062 | - |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpTIR1 | Auxin receptor in a TIR1/AFB family | Published |
MpTIR1 is the central focus of this study, characterized as an evolutionarily conserved auxin receptor. Null and conditional knockout mutants were generated and shown to be viable; the protein interacted with MpIAA in auxin-dependent pull-down assays. Loss of MpTIR1 abolished organogenesis but not cell survival.
2 core 6 peripheral
Caution: MBEX data are analyzed based on the v7.1 genome.
Link to the original image in MBEX
Sequences: |
Gene UTR + CDS + intron |
| >Mp6g02750.1 ggactctccc tcaaactcgg actcttcctt cccacttttc ttcctttctt ccttccttgc ttccttgctt ccttcctccc ccccttcccc actgcctgcc ttcattcgag tctcgctcgt cctcctcctg ctgctgctgc cctcgcttgc ttctgctgct ctctgtactt gctacaatcc tagcacgtct ttgcgcctct tcgttttcca ctttgcgttg tccagtcgtt gggcttccgg aaacgagagt gttgccatcg tatcggctgc tgctgctgct gctgccgtcc agtcggggga tgtggtcgag tgtctgttag cgtctgcggg tagctaggac agtctagccc ctcagagaga aagagagaga gaagagagct cattggggtc ggagacggat gctcgatgct ggtgcgcgcc ggagaagtat atagactcgt gactgtttga ttcagacttg atctcgatag cgcagcaggt ggtgggcggg cgcttacaga cacagacagc gcttcttcgc agaggattgg ttgcgcccac ggagaaacaa cgagagaaac gttgatgtgc atctgttggc ctgcctgcgt gccagaggcg ctctagaggc gcagagagtg gggtggcggc gccgggcgag ggggcggggc ggaggcgcaa atggggcgcg gaggcgtgca ttgatgtgca gcggggcgag ggcggggcga ggccgggtgg acatgtcaca cgccatgagt ggtacgacat tcctggccaa gcgactcggc aggcgcggga ggatgggatc ttgcaatggt ctggtcataa aggttgcttt ccgatgagtt gagggctcat tttctcgttc ttcttcgtct tctccaggtc gccgccgccg cagctgctgc tgctgctccc gcagccgagc gccgagggat gtgcttgtga tccggggcgg gcgacaatcg attcggcagg gctggattgg aggctaaagc tggggcatga acggcaagga cagcgagcta gtcgcagcat aggagcgaag cgcaagcgga gttcaggatt tggaagtagt ggtagcctag tcaaagtgga ttgtgacgag gaaggaggag ggggagagat gccctctccc tttcctgacg aggttctgga gcacgtgcta gtttttctgc agtcgcacaa agataggaac tcagtgtcat tagtttgtaa agcttggttc aaggctgaga aatggagcag gcatcgggtt tttgtaggca actgctacgc cgtgtcgccc cagatggtta taaatcgatt ttcgaaattg aactctctgc acatcaaggg caggcctcga ttcgccgatt tcggcctcgt gccccaccat tggggcgcat acatttcgcc ctgggtcacg gcgctggccc aatcgtgccc ttggttcgag gagctccgat tgaagcgaat gaccgtctcg gatgacagct tattgatgat cgcgcaatct ttcccgaact tcaagtccct aatccttacg agctgcgacg gcctcagtac cgacggcctc gcttacataa ccagcagctg caggtatgat ttcctctttc cccgtccctt ccttcccgac atatctctca ctcgctctct cttgggagcg ccggctcgtg ccgatgttcg tgctactgct ctctcgtccg tatggcgatc ctgctcccgt cggcccatgg ccacggtgta gtccgtcacc ccgaagtcgt cgtggtttct tccagggcga gctcggctct cgctccaggt cgtgccagcc atgaaatttc tcgcgatttc cgacttctga cagcaaattg ggacgaaagt gaagagggtt agtcttcgcg cactcttgct ccgacgagca aatgttctct ctatcgctct cccgccgcgc agtggagtgg ccttcgactc cttgagagct cggtcggggc ccctgccagg gccagattca gacgcagccc ttaggtcagg cctgctgcct ctgagcgagt acagaacact atgggagctc tgtacttgca ctcgttcttc tgtgcggagc tcgtacttcc acacagacga cgacgaccat cgtcatcctc gtccgttcta tgggcatcac ctcctgctgg gctggggctc ggtcgtcgct ctgcgttcaa ttgccactgg agctcgtgtt ggtaacactt tctcgggaat gcggtggcga gtcgctctca ggaccccaag gcccagccca ggcctcggct cgagcaacct ggggcttgca agcgcacaac cgagcgcacg agctcaggag cagggaagcc tcattcgcag gcgagacatc gcgcgcttca tttggaggag aggaggagaa gccattgtgg gggtgttgca gtggtcgaga gtctcgagta gggtgcgggg tgtgctttga gaggtggtga ggcgatcaag cttgggaggt agttgtgtat ggggctggac attgtgggtg cggggcgcga tgatctgaca ctcggagctt gtttctcgtt tctgcgcagg catttagaga ggttagatct ggaggagaat gaaattgagc cgcgaggagg agagtggttg agttgcttcc cggacaatca cacgtctttg gtgtcgctga attttgcaac cgtggatagc gccatagatt ttgacgccct ggaggcgctg gtggagaggt ccaaaaactt gaggagcttg aaagttcaca gggaagtgaa cctcgagcaa ctgaatcggc tgctggcgcg agccccgaat ctggtggaac tgggatcggg ctcgtacacg caactgctca agtggggtca atattccgaa ttgtccagcg ctctcggcag atgcaagcag ctgcgcagtc tctccggatt ctgggaggtg gagcccgtct acctcccgtc tctcttcgca gtgtgcgcca atttgacgag tctcaacctc agctacgtcc tcctccacac caccgagctc gtgaaactca taccctactg ccaaaacttg gagcgcctct tggtatgtac ttgcctctcc cacaaggcct cgggctagag catcggtcca gcttttgtct tagtcgccac ctttgatggt cgagttcagc gaattgacga tccacggtgg cctctcgttg cgttgcgcag gtgcaagact acgtcggaga caaaggtctg caggcagtgg cggtgagctg caggaatctg caggagctgc gagtgtaccc gtcgacggcc gaagggttcg tgacggagga ggggctgata gcgatctcgg aggggtgccc gaacctgatg aagattcttt atttttgcaa gtcgatgacc aatgcagcag tcataacttt cgccaacaaa ctccctaatt gtactcactt ccgattgtgt atattgacgc cggggcaacc ggattgcgtc acgaacgagc ccatggacaa ggggttcgga gcagtggtgc agaactgcaa gaagctcact cggctggctg tctcggggca gctcaccgac agggccttcg agtacttcgg catgtacggg aagaagctgg aaaccatctc catcgccttc gccggggaca gcgaccgggg cctggaatac gtgctcaagg ggtgtcccaa cttgcgcaag cttgaaattc gagactgccc tttcggagat gacgccctgc tgtcgggcgt gcatcgctac gagcagatga aatctatgtg gatgtctgcg tgtaaggtta gtcgtaacgg ggccgtctgg ctagccaagt cgaaaccgtc tttgaacgtg gagattataa aagagaatac ggatgatgat cctgctaatg tgctcaatgt cgagaagctg tacctgtacc ggactttggt gggccgacga tccgatgccc ccgactttgt cgaaatagca caatgacatg aagaaccaat tgtcaaattg ctgcctcttt ccttggttaa ctttgtgatt tcctctctac cgcccttcgg ttgccagcta ctttaaattg aaacgcaagt ctctgtttag attggagtgt ctttctacca gttgaaggat ttgattttgt aaataatagt atcctatttt ctggacgaag ggagagatgt agcattctcg ttattgagtg ggcctctcgg ctgatcccgt cagcctcagc cggcttcttt catgtgtaac tgtgtcagac ttgtcatact agggggcctg atctggtcga cccgagctcc ttcggcgagc tggtcgaata gagtgctgaa tgttgagacc gccataactg ccgttttaag cactagtctg tacttgcgag aagcgatgat gcatgatcat ccgcactcga gcacaggaag ggtaaattgt gcccacccgt tgtcggatgt tacattgtgg tgttcacgac cacttaaaaa acttttttgg gcaattatct acaatttctt g |
mRNA UTR + CDS |
| >Mp6g02750.1 ggactctccc tcaaactcgg actcttcctt cccacttttc ttcctttctt ccttccttgc ttccttgctt ccttcctccc ccccttcccc actgcctgcc ttcattcgag tctcgctcgt cctcctcctg ctgctgctgc cctcgcttgc ttctgctgct ctctgtactt gctacaatcc tagcacgtct ttgcgcctct tcgttttcca ctttgcgttg tccagtcgtt gggcttccgg aaacgagagt gttgccatcg tatcggctgc tgctgctgct gctgccgtcc agtcggggga tgtggtcgag tgtctgttag cgtctgcggg tagctaggac agtctagccc ctcagagaga aagagagaga gaagagagct cattggggtc ggagacggat gctcgatgct ggtgcgcgcc ggagaagtat atagactcgt gactgtttga ttcagacttg atctcgatag cgcagcaggt ggtgggcggg cgcttacaga cacagacagc gcttcttcgc agaggattgg ttgcgcccac ggagaaacaa cgagagaaac gttgatgtgc atctgttggc ctgcctgcgt gccagaggcg ctctagaggc gcagagagtg gggtggcggc gccgggcgag ggggcggggc ggaggcgcaa atggggcgcg gaggcgtgca ttgatgtgca gcggggcgag ggcggggcga ggccgggtgg acatgtcaca cgccatgagt ggtacgacat tcctggccaa gcgactcggc aggcgcggga ggatgggatc ttgcaatggt ctggtcataa aggttgcttt ccgatgagtt gagggctcat tttctcgttc ttcttcgtct tctccaggtc gccgccgccg cagctgctgc tgctgctccc gcagccgagc gccgagggat gtgcttgtga tccggggcgg gcgacaatcg attcggcagg gctggattgg aggctaaagc tggggcatga acggcaagga cagcgagcta gtcgcagcat aggagcgaag cgcaagcgga gttcaggatt tggaagtagt ggtagcctag tcaaagtgga ttgtgacgag gaaggaggag ggggagagat gccctctccc tttcctgacg aggttctgga gcacgtgcta gtttttctgc agtcgcacaa agataggaac tcagtgtcat tagtttgtaa agcttggttc aaggctgaga aatggagcag gcatcgggtt tttgtaggca actgctacgc cgtgtcgccc cagatggtta taaatcgatt ttcgaaattg aactctctgc acatcaaggg caggcctcga ttcgccgatt tcggcctcgt gccccaccat tggggcgcat acatttcgcc ctgggtcacg gcgctggccc aatcgtgccc ttggttcgag gagctccgat tgaagcgaat gaccgtctcg gatgacagct tattgatgat cgcgcaatct ttcccgaact tcaagtccct aatccttacg agctgcgacg gcctcagtac cgacggcctc gcttacataa ccagcagctg caggcattta gagaggttag atctggagga gaatgaaatt gagccgcgag gaggagagtg gttgagttgc ttcccggaca atcacacgtc tttggtgtcg ctgaattttg caaccgtgga tagcgccata gattttgacg ccctggaggc gctggtggag aggtccaaaa acttgaggag cttgaaagtt cacagggaag tgaacctcga gcaactgaat cggctgctgg cgcgagcccc gaatctggtg gaactgggat cgggctcgta cacgcaactg ctcaagtggg gtcaatattc cgaattgtcc agcgctctcg gcagatgcaa gcagctgcgc agtctctccg gattctggga ggtggagccc gtctacctcc cgtctctctt cgcagtgtgc gccaatttga cgagtctcaa cctcagctac gtcctcctcc acaccaccga gctcgtgaaa ctcataccct actgccaaaa cttggagcgc ctcttggtgc aagactacgt cggagacaaa ggtctgcagg cagtggcggt gagctgcagg aatctgcagg agctgcgagt gtacccgtcg acggccgaag ggttcgtgac ggaggagggg ctgatagcga tctcggaggg gtgcccgaac ctgatgaaga ttctttattt ttgcaagtcg atgaccaatg cagcagtcat aactttcgcc aacaaactcc ctaattgtac tcacttccga ttgtgtatat tgacgccggg gcaaccggat tgcgtcacga acgagcccat ggacaagggg ttcggagcag tggtgcagaa ctgcaagaag ctcactcggc tggctgtctc ggggcagctc accgacaggg ccttcgagta cttcggcatg tacgggaaga agctggaaac catctccatc gccttcgccg gggacagcga ccggggcctg gaatacgtgc tcaaggggtg tcccaacttg cgcaagcttg aaattcgaga ctgccctttc ggagatgacg ccctgctgtc gggcgtgcat cgctacgagc agatgaaatc tatgtggatg tctgcgtgta aggttagtcg taacggggcc gtctggctag ccaagtcgaa accgtctttg aacgtggaga ttataaaaga gaatacggat gatgatcctg ctaatgtgct caatgtcgag aagctgtacc tgtaccggac tttggtgggc cgacgatccg atgcccccga ctttgtcgaa atagcacaat gacatgaaga accaattgtc aaattgctgc ctctttcctt ggttaacttt gtgatttcct ctctaccgcc cttcggttgc cagctacttt aaattgaaac gcaagtctct gtttagattg gagtgtcttt ctaccagttg aaggatttga ttttgtaaat aatagtatcc tattttctgg acgaagggag agatgtagca ttctcgttat tgagtgggcc tctcggctga tcccgtcagc ctcagccggc ttctttcatg tgtaactgtg tcagacttgt catactaggg ggcctgatct ggtcgacccg agctccttcg gcgagctggt cgaatagagt gctgaatgtt gagaccgcca taactgccgt tttaagcact agtctgtact tgcgagaagc gatgatgcat gatcatccgc actcgagcac aggaagggta aattgtgccc acccgttgtc ggatgttaca ttgtggtgtt cacgaccact taaaaaactt ttttgggcaa ttatctacaa tttcttg |
CDS |
| >Mp6g02750.1 atgccctctc cctttcctga cgaggttctg gagcacgtgc tagtttttct gcagtcgcac aaagatagga actcagtgtc attagtttgt aaagcttggt tcaaggctga gaaatggagc aggcatcggg tttttgtagg caactgctac gccgtgtcgc cccagatggt tataaatcga ttttcgaaat tgaactctct gcacatcaag ggcaggcctc gattcgccga tttcggcctc gtgccccacc attggggcgc atacatttcg ccctgggtca cggcgctggc ccaatcgtgc ccttggttcg aggagctccg attgaagcga atgaccgtct cggatgacag cttattgatg atcgcgcaat ctttcccgaa cttcaagtcc ctaatcctta cgagctgcga cggcctcagt accgacggcc tcgcttacat aaccagcagc tgcaggcatt tagagaggtt agatctggag gagaatgaaa ttgagccgcg aggaggagag tggttgagtt gcttcccgga caatcacacg tctttggtgt cgctgaattt tgcaaccgtg gatagcgcca tagattttga cgccctggag gcgctggtgg agaggtccaa aaacttgagg agcttgaaag ttcacaggga agtgaacctc gagcaactga atcggctgct ggcgcgagcc ccgaatctgg tggaactggg atcgggctcg tacacgcaac tgctcaagtg gggtcaatat tccgaattgt ccagcgctct cggcagatgc aagcagctgc gcagtctctc cggattctgg gaggtggagc ccgtctacct cccgtctctc ttcgcagtgt gcgccaattt gacgagtctc aacctcagct acgtcctcct ccacaccacc gagctcgtga aactcatacc ctactgccaa aacttggagc gcctcttggt gcaagactac gtcggagaca aaggtctgca ggcagtggcg gtgagctgca ggaatctgca ggagctgcga gtgtacccgt cgacggccga agggttcgtg acggaggagg ggctgatagc gatctcggag gggtgcccga acctgatgaa gattctttat ttttgcaagt cgatgaccaa tgcagcagtc ataactttcg ccaacaaact ccctaattgt actcacttcc gattgtgtat attgacgccg gggcaaccgg attgcgtcac gaacgagccc atggacaagg ggttcggagc agtggtgcag aactgcaaga agctcactcg gctggctgtc tcggggcagc tcaccgacag ggccttcgag tacttcggca tgtacgggaa gaagctggaa accatctcca tcgccttcgc cggggacagc gaccggggcc tggaatacgt gctcaagggg tgtcccaact tgcgcaagct tgaaattcga gactgccctt tcggagatga cgccctgctg tcgggcgtgc atcgctacga gcagatgaaa tctatgtgga tgtctgcgtg taaggttagt cgtaacgggg ccgtctggct agccaagtcg aaaccgtctt tgaacgtgga gattataaaa gagaatacgg atgatgatcc tgctaatgtg ctcaatgtcg agaagctgta cctgtaccgg actttggtgg gccgacgatc cgatgccccc gactttgtcg aaatagcaca atga |
Protein |
| >Mp6g02750.1 MPSPFPDEVL EHVLVFLQSH KDRNSVSLVC KAWFKAEKWS RHRVFVGNCY AVSPQMVINR FSKLNSLHIK GRPRFADFGL VPHHWGAYIS PWVTALAQSC PWFEELRLKR MTVSDDSLLM IAQSFPNFKS LILTSCDGLS TDGLAYITSS CRHLERLDLE ENEIEPRGGE WLSCFPDNHT SLVSLNFATV DSAIDFDALE ALVERSKNLR SLKVHREVNL EQLNRLLARA PNLVELGSGS YTQLLKWGQY SELSSALGRC KQLRSLSGFW EVEPVYLPSL FAVCANLTSL NLSYVLLHTT ELVKLIPYCQ NLERLLVQDY VGDKGLQAVA VSCRNLQELR VYPSTAEGFV TEEGLIAISE GCPNLMKILY FCKSMTNAAV ITFANKLPNC THFRLCILTP GQPDCVTNEP MDKGFGAVVQ NCKKLTRLAV SGQLTDRAFE YFGMYGKKLE TISIAFAGDS DRGLEYVLKG CPNLRKLEIR DCPFGDDALL SGVHRYEQMK SMWMSACKVS RNGAVWLAKS KPSLNVEIIK ENTDDDPANV LNVEKLYLYR TLVGRRSDAP DFVEIAQ |