Mp8g17910



Description

Annotation

Database ID Description
KEGG K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
KOG KOG1246 DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; C-term missing; [R]
Pfam PF08429 PLU-1-like protein
MobiDBLite mobidb-lite consensus disorder prediction
ProSitePatterns PS01359 Zinc finger PHD-type signature.
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
Pfam PF02375 jmjN domain
SUPERFAMILY SSF51197 Clavaminate synthase-like
CDD cd16100 ARID
ProSiteProfiles PS51183 JmjN domain profile.
SUPERFAMILY SSF46774 ARID-like
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
Pfam PF01388 ARID/BRIGHT DNA binding domain
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain
SMART SM00249 PHD_3
Gene3D G3DSA:1.10.150.60 -
PANTHER PTHR10694:SF8 LYSINE-SPECIFIC DEMETHYLASE LID
Pfam PF02373 JmjC domain, hydroxylase
Gene3D G3DSA:2.60.120.650 Cupin
SMART SM00558 cupin_9
SMART SM01014 ARID_2
SMART SM00501 bright_3
SMART SM00545 JmjN_1
CDD cd15543 PHD_RSF1
ProSiteProfiles PS51184 JmjC domain profile.
Pfam PF02928 C5HC2 zinc finger
Pfam PF00628 PHD-finger
PANTHER PTHR10694 LYSINE-SPECIFIC DEMETHYLASE
ProSiteProfiles PS51011 ARID domain profile.
GO GO:0003677 DNA binding
MapolyID Mapoly0030s0125 -

Nomenclature

Gene symbol Product Transcript ID Status
MpARID2 transcription factor, ARID Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g17910.1 chr8:20072281..20094630 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.