Mp1g08430



Description

Annotation

Database ID Description
KOG KOG4422 Uncharacterized conserved protein; N-term missing; C-term missing; [S]
KOG KOG4318 Bicoid mRNA stability factor; C-term missing; [A]
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile.
SMART SM00463 SMR_2
Gene3D G3DSA:1.25.40.10 -
PANTHER PTHR47936 -
Gene3D G3DSA:3.30.1370.110 -
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50828 Smr domain profile.
ProSiteProfiles PS51318 Twin arginine translocation (Tat) signal profile.
Pfam PF13041 PPR repeat family
Pfam PF01535 PPR repeat
SUPERFAMILY SSF160443 SMR domain-like
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain
PANTHER PTHR47936:SF1 PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN
Pfam PF17177 Pentacotripeptide-repeat region of PRORP
SUPERFAMILY SSF48452 TPR-like
MapolyID Mapoly0036s0086 -

Nomenclature

Gene symbol Product Transcript ID Status
MpPPR_67 Pentatricopeptide repeat proteins Published

Associated Literature (AI-based literature mining)

Single-copy GUN1 gene studied via two CRISPR deletion lines (Mpgun1) and complementation of Arabidopsis Atgun1. Mpgun1 mutants are indistinguishable from wild-type under nonstress and MpGUN1 is not required for GUN1-type repression of PhANGs, showing the protein has an ancient conserved role but not in retrograde signalling.

1 core 0 peripheral

Honkanen, S., et al. (2022) · New Phytologist  research experimental subject
Single-copy GUN1 gene studied via two CRISPR deletion lines (Mpgun1) and complementation of Arabidopsis Atgun1. Mpgun1 mutants are indistinguishable from wild-type under nonstress and MpGUN1 is not required for GUN1-type repression of PhANGs, showing the protein has an ancient conserved role but not in retrograde signalling.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g08430.1 chr1:8691447..8696896 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v7.1r2 genome.

Link to the original image in MBEX


Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.