| Database | ID | Description |
|---|---|---|
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins |
| PANTHER | PTHR46565 | COLD SHOCK DOMAIN PROTEIN 2 |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| Pfam | PF00313 | 'Cold-shock' DNA-binding domain |
| SMART | SM00343 | c2hcfinal6 |
| SMART | SM00357 | csp_8 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. |
| ProSiteProfiles | PS51857 | Cold-shock (CSD) domain profile. |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains |
| Gene3D | G3DSA:2.40.50.140 | - |
| FunFam | G3DSA:2.40.50.140:FF:000382 | Cold shock protein 1 |
| PRINTS | PR00050 | Cold shock protein signature |
| ProSitePatterns | PS00352 | Cold-shock (CSD) domain signature. |
| Gene3D | G3DSA:4.10.60.10 | - |
| Pfam | PF00098 | Zinc knuckle |
| CDD | cd04458 | CSP_CDS |
| KEGG | K18754 | protein lin-28 |
| KEGG | K03704 | cold shock protein |
| KOG | KOG3070 | Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing; N-term missing; C-term missing; [J] |
| KOG | KOG4400 | E3 ubiquitin ligase interacting with arginine methyltransferase; N-term missing; C-term missing; [O] |
| MapolyID | Mapoly0005s0203 | - |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpCSD | transcription factor, CSD | Published |
Caution: MBEX data are analyzed based on the v6.1 genome.
Link to the original image in MBEX
Sequences: |
Gene UTR + CDS + intron |
| >Mp1g04040.1 CCTTCCCTCC TCTTCTCTTC TTCCCTGCGC CACAACATCG TAGAGCTCCT CTTTTGCCCT CCGCCTGCTG CATTCTGCGG TTCAGTAAGC CACGAGAGAG CCCGAGGGAG AGGAGAAAGG GATAGTAGTG TGGGTGTGGT TGTCCCTGGT GTCGGAGCGA AAGTAGTTTA AGAGGTGTGT TAATGTAAGC AAGCTCTCGC CTAGTGAATA GCGTTGGTGA TCTTAAGCAA GCAAGCGAGC TCTAGCCCAA GAGGGTGAGT GGGGACTCAG TGACGTGATT GAGCTTGGAG CCTGAACAAC CAGGATTGTC GAGTGAAGTC CGTGGTGTGG TGGAGACTTG CCTACAATAC CCTGCACGCG AGCGGGCACG CAGAGGAGAC CGAGGCTTCT CCCCTGAGTT GCTGCTGTCG AGACGCGGCA TATCCCCGAA AAGGGTTTAA GATAGTGGTC GATCAGAGAG TCTGCGCGCT CTCTGTCGTA GGTCGTGCAC GGGCTGGGAG TGATATCGAC TGATTGTCGT TCTCTACGTT GAAGTAGGCA ATGGCGGACG ATTCGCCGGT AGTGAAGAAG ACCGGGAAGG TGAAATGGTT CAATAGCAGT AAAGGGTTTG GTTTCATCAC CCCTGATGAT GGCGGTGAGG ACCTCTTTGT CCACCAAACG TCTATCCATG CTGAGGGATT TAGGTCTTTG AGGGAAGGAG AGAGCGTTGA GTTTACTGTC GAAGTAGGAG AAGACAATCG AACCAAAGCT CTGGATGTCA CTGGACCCGG AGGAAGTTAC GTCCAAGGTG CTCCTCGTCG AGACGGGTAT GGAGGTGGAG GAAGAGGAGG TGGTGGTGGA GGTGGTGGTG GTGGAGGAAA CTTCAGCGGA GGAATGGGTA GAGGAAGGGG CCGTGGTGGA AGAGGCGGAG GCAACTTCGC CGGAGGAGGC GGTGGTGGAG ATCGGACATG TTACAACTGC GGAGAGCCTG GACACATTGC TCGTAACTGT CCCAGTGAAC CTGCTGGCAA CGGCAGAGCA GGTGGTGGTG GCGGTGATGG CGGTAATCGC AACTGCTACA ACTGTGGCGA GTCAGGGCAT CTTGCTCGAG ATTGCGCTCC GGCTGCAGCT GCCTAGACGG CGATCCACTT TTTTTGATTT GTGGTCTTCT GGGACCTTTG GTAGTTTTCG GTCGCTGGAA GCCTCGCAGT TTAATCGTCG AAGGTTTTGA TGATTTCACT CGATGGGTGT AATTCAACTC AAGACCGCAG AAAGATTGCG CATTCTCTTG CTTCCCAATG CTTTCGGCTG TTGTACCTCT GAAGGCAAAG TCCATCCTCT CTTGAGCTTG TGATGGCTGA ATGAGGTGAT GTTGCTTAAG CTTCTCAGTT GATTCTTTTT GTGGGGGTGT GAAGTGGACG TCTTGAAGGA GAACTTTCGT TTATCGTGGA GAATCCCGCT GTCGTTTTTC TGTGGACGGG CTGTGTGCAA GTTGTGTTGC CCGTTGTTTA CTCCACTCTC AACATCGACG AGCGGCGGGT TAGGGGCGTA GGTGAAAGCA GAAAAGGTCG AGGCCGGTAG ATGTCGTGGG AAAGAAAGTG TTTAGGATGG GTTGTTACGT TCTGGAAAGC GTACGAAAGT GACGTGTGGA AACTCTGAGA ATGGGTGGCT AGGTCATGGC TCTATTCACC CGTCTCTCTT ACTTCATTGC TTCTTTTTAA GGAGCAAGTT TTCACTTCCT CTCCTCTTCG AGGCTATCCT GTGCTTAATT TCCTCCTGAG TGCTGAAGAC TCTCCTTCGA GATTTTTTGT AGTATTCCTT GGCAAGTGGT GGGCTTTCGT TTGCTCTACG GGCCCTGTTT TGTCTCCGTG GTTTTGTTTC CTTCTCCGTC TGAAACTTCT TCCTCGACGT AGGCCGGGAG GCTTGGGTCT TATGGAGATG GCGCTTGGTG CAGTGTTGAC ATCAGCAAGT TGTGGAAGGC CACGATTGGT TGACCTTGCC CTCCTTGGTT TTGTCTTTGT ACTTCAATGC CCTCTGCTTA GGAGTGGCAT ACCCGGGAGA CTTGCTATTT CGGTTGAGCT AGTAGCTTTT AGTTTTATTC TTATACTTTC CTTACAGTAG ATCTCATTTG GCATTCCGGA CGGCATGAAA GCCTGTTCTG TATAGTCACA AAAAATGTCC GCATCTTCTC CAATGCACTT CTACCATTAA TTTTCCACAG TATTTCTGTG TCCAATTTTT GTGTACAACA TCTGGTCTCA CTTCTTGTTG TATCTTGTAA GTGACGTGTT CTTCTCTTTG ATGCCGCGAA TGATTGTACA ATCAACTCTC AATTGTGTTA GAAAGTTCGC AGATCCACCT TGTGCTATAT ACGACATTGT CGTGCATTGA GATCAGGTTC GATTTCGATC AATTGCCGGT GAACGATGAA GTGCTTCTGC ATGTCGAAAC ACAGTTTGAA GAAGTTGAGC GTTGCTTGAG TTGACGAATG TGTTCCTTGT CATGATTAAC ACAACCTATC CAGGCGCTGA TGTAACTGTA AATGGTACTC ATGCGTGAGT AGAGTAATCT TTCTATCACA CCCGGAACAC TTGACAAGTA GGCCAATCGT AGGGCAAGTG GAAAGACCTG TCCATGCAAC CAGCCAAGAG CAGACGACCG TTATCTCTTA ATCTCTCAAA CTTAACGCAC ACCTTCAAGG AAGGTAAATA AAGATGTAAG TTGAC |
mRNA UTR + CDS |
| >Mp1g04040.1 CCTTCCCTCC TCTTCTCTTC TTCCCTGCGC CACAACATCG TAGAGCTCCT CTTTTGCCCT CCGCCTGCTG CATTCTGCGG TTCAGTAAGC CACGAGAGAG CCCGAGGGAG AGGAGAAAGG GATAGTAGTG TGGGTGTGGT TGTCCCTGGT GTCGGAGCGA AAGTAGTTTA AGAGGTGTGT TAATGTAAGC AAGCTCTCGC CTAGTGAATA GCGTTGGTGA TCTTAAGCAA GCAAGCGAGC TCTAGCCCAA GAGGGTGAGT GGGGACTCAG TGACGTGATT GAGCTTGGAG CCTGAACAAC CAGGATTGTC GAGTGAAGTC CGTGGTGTGG TGGAGACTTG CCTACAATAC CCTGCACGCG AGCGGGCACG CAGAGGAGAC CGAGGCTTCT CCCCTGAGTT GCTGCTGTCG AGACGCGGCA TATCCCCGAA AAGGGTTTAA GATAGTGGTC GATCAGAGAG TCTGCGCGCT CTCTGTCGTA GGTCGTGCAC GGGCTGGGAG TGATATCGAC TGATTGTCGT TCTCTACGTT GAAGTAGGCA ATGGCGGACG ATTCGCCGGT AGTGAAGAAG ACCGGGAAGG TGAAATGGTT CAATAGCAGT AAAGGGTTTG GTTTCATCAC CCCTGATGAT GGCGGTGAGG ACCTCTTTGT CCACCAAACG TCTATCCATG CTGAGGGATT TAGGTCTTTG AGGGAAGGAG AGAGCGTTGA GTTTACTGTC GAAGTAGGAG AAGACAATCG AACCAAAGCT CTGGATGTCA CTGGACCCGG AGGAAGTTAC GTCCAAGGTG CTCCTCGTCG AGACGGGTAT GGAGGTGGAG GAAGAGGAGG TGGTGGTGGA GGTGGTGGTG GTGGAGGAAA CTTCAGCGGA GGAATGGGTA GAGGAAGGGG CCGTGGTGGA AGAGGCGGAG GCAACTTCGC CGGAGGAGGC GGTGGTGGAG ATCGGACATG TTACAACTGC GGAGAGCCTG GACACATTGC TCGTAACTGT CCCAGTGAAC CTGCTGGCAA CGGCAGAGCA GGTGGTGGTG GCGGTGATGG CGGTAATCGC AACTGCTACA ACTGTGGCGA GTCAGGGCAT CTTGCTCGAG ATTGCGCTCC GGCTGCAGCT GCCTAGACGG CGATCCACTT TTTTTGATTT GTGGTCTTCT GGGACCTTTG GTAGTTTTCG GTCGCTGGAA GCCTCGCAGT TTAATCGTCG AAGGTTTTGA TGATTTCACT CGATGGGTGT AATTCAACTC AAGACCGCAG AAAGATTGCG CATTCTCTTG CTTCCCAATG CTTTCGGCTG TTGTACCTCT GAAGGCAAAG TCCATCCTCT CTTGAGCTTG TGATGGCTGA ATGAGGTGAT GTTGCTTAAG CTTCTCAGTT GATTCTTTTT GTGGGGGTGT GAAGTGGACG TCTTGAAGGA GAACTTTCGT TTATCGTGGA GAATCCCGCT GTCGTTTTTC TGTGGACGGG CTGTGTGCAA GTTGTGTTGC CCGTTGTTTA CTCCACTCTC AACATCGACG AGCGGCGGGT TAGGGGCGTA GGTGAAAGCA GAAAAGGTCG AGGCCGGTAG ATGTCGTGGG AAAGAAAGTG TTTAGGATGG GTTGTTACGT TCTGGAAAGC GTACGAAAGT GACGTGTGGA AACTCTGAGA ATGGGTGGCT AGGTCATGGC TCTATTCACC CGTCTCTCTT ACTTCATTGC TTCTTTTTAA GGAGCAAGTT TTCACTTCCT CTCCTCTTCG AGGCTATCCT GTGCTTAATT TCCTCCTGAG TGCTGAAGAC TCTCCTTCGA GATTTTTTGT AGTATTCCTT GGCAAGTGGT GGGCTTTCGT TTGCTCTACG GGCCCTGTTT TGTCTCCGTG GTTTTGTTTC CTTCTCCGTC TGAAACTTCT TCCTCGACGT AGGCCGGGAG GCTTGGGTCT TATGGAGATG GCGCTTGGTG CAGTGTTGAC ATCAGCAAGT TGTGGAAGGC CACGATTGGT TGACCTTGCC CTCCTTGGTT TTGTCTTTGT ACTTCAATGC CCTCTGCTTA GGAGTGGCAT ACCCGGGAGA CTTGCTATTT CGGTTGAGCT AGTAGCTTTT AGTTTTATTC TTATACTTTC CTTACAGTAG ATCTCATTTG GCATTCCGGA CGGCATGAAA GCCTGTTCTG TATAGTCACA AAAAATGTCC GCATCTTCTC CAATGCACTT CTACCATTAA TTTTCCACAG TATTTCTGTG TCCAATTTTT GTGTACAACA TCTGGTCTCA CTTCTTGTTG TATCTTGTAA GTGACGTGTT CTTCTCTTTG ATGCCGCGAA TGATTGTACA ATCAACTCTC AATTGTGTTA GAAAGTTCGC AGATCCACCT TGTGCTATAT ACGACATTGT CGTGCATTGA GATCAGGTTC GATTTCGATC AATTGCCGGT GAACGATGAA GTGCTTCTGC ATGTCGAAAC ACAGTTTGAA GAAGTTGAGC GTTGCTTGAG TTGACGAATG TGTTCCTTGT CATGATTAAC ACAACCTATC CAGGCGCTGA TGTAACTGTA AATGGTACTC ATGCGTGAGT AGAGTAATCT TTCTATCACA CCCGGAACAC TTGACAAGTA GGCCAATCGT AGGGCAAGTG GAAAGACCTG TCCATGCAAC CAGCCAAGAG CAGACGACCG TTATCTCTTA ATCTCTCAAA CTTAACGCAC ACCTTCAAGG AAGGTAAATA AAGATGTAAG TTGAC |
CDS |
| >Mp1g04040.1 ATGGCGGACG ATTCGCCGGT AGTGAAGAAG ACCGGGAAGG TGAAATGGTT CAATAGCAGT AAAGGGTTTG GTTTCATCAC CCCTGATGAT GGCGGTGAGG ACCTCTTTGT CCACCAAACG TCTATCCATG CTGAGGGATT TAGGTCTTTG AGGGAAGGAG AGAGCGTTGA GTTTACTGTC GAAGTAGGAG AAGACAATCG AACCAAAGCT CTGGATGTCA CTGGACCCGG AGGAAGTTAC GTCCAAGGTG CTCCTCGTCG AGACGGGTAT GGAGGTGGAG GAAGAGGAGG TGGTGGTGGA GGTGGTGGTG GTGGAGGAAA CTTCAGCGGA GGAATGGGTA GAGGAAGGGG CCGTGGTGGA AGAGGCGGAG GCAACTTCGC CGGAGGAGGC GGTGGTGGAG ATCGGACATG TTACAACTGC GGAGAGCCTG GACACATTGC TCGTAACTGT CCCAGTGAAC CTGCTGGCAA CGGCAGAGCA GGTGGTGGTG GCGGTGATGG CGGTAATCGC AACTGCTACA ACTGTGGCGA GTCAGGGCAT CTTGCTCGAG ATTGCGCTCC GGCTGCAGCT GCCTAG |
Protein |
| >Mp1g04040.1 MADDSPVVKK TGKVKWFNSS KGFGFITPDD GGEDLFVHQT SIHAEGFRSL REGESVEFTV EVGEDNRTKA LDVTGPGGSY VQGAPRRDGY GGGGRGGGGG GGGGGGNFSG GMGRGRGRGG RGGGNFAGGG GGGDRTCYNC GEPGHIARNC PSEPAGNGRA GGGGGDGGNR NCYNCGESGH LARDCAPAAA A |