Mp4g03900



Description

Annotation

Database ID Description
KEGG K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
KOG KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily; [A]
PIRSF PIRSF005198 SKI2
Gene3D G3DSA:1.20.1500.20 -
SMART SM01142 DSHCT_2
Coils Coil Coil
PANTHER PTHR47961 DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
CDD cd18795 SF2_C_Ski2
Gene3D G3DSA:1.10.3380.30 -
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Gene3D G3DSA:3.40.50.300 -
Pfam PF13234 rRNA-processing arch domain
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR47961:SF2 DEAD/DEAH BOX HELICASE FAMILY PROTEIN, EXPRESSED
SMART SM00490 helicmild6
SMART SM00487 ultradead3
CDD cd13154 KOW_Mtr4
Pfam PF00270 DEAD/DEAH box helicase
Pfam PF00271 Helicase conserved C-terminal domain
Gene3D G3DSA:2.40.30.300 -
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Pfam PF08148 DSHCT (NUC185) domain
CDD cd18024 DEXHc_Mtr4-like
MapolyID Mapoly0044s0084 -

Nomenclature

Gene symbol Product Transcript ID Status
MpHEN2 DExH-box RNA helicase Published

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g03900.1 chr4:4459941..4475293 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g03900.2 chr4:4459941..4475293 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.