Mp5g06580



Description

Annotation

Database ID Description
KOG KOG0386 Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily); [BK]
KOG KOG4369 RTK signaling protein MASK/UNC-44; N-term missing; C-term missing; [T]
KOG KOG0579 Ste20-like serine/threonine protein kinase; N-term missing; C-term missing; [T]
KOG KOG4701 Chitinase; N-term missing; [M]
KOG KOG3685 Uncharacterized conserved protein; C-term missing; [S]
KOG KOG3685 Uncharacterized conserved protein; N-term missing; C-term missing; [S]
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00490 helicmild6
CDD cd18793 SF2_C_SNF
SMART SM00487 ultradead3
CDD cd17996 DEXHc_SMARCA2_SMARCA4
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
PANTHER PTHR10799 SNF2/RAD54 HELICASE FAMILY
SMART SM01314 SnAC_2
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
PANTHER PTHR10799:SF973 CHROMATIN STRUCTURE-REMODELING COMPLEX PROTEIN SYD
Coils Coil Coil
Pfam PF00176 SNF2 family N-terminal domain
ProSiteProfiles PS51204 HSA domain profile.
Gene3D G3DSA:3.40.50.300 -
Gene3D G3DSA:3.40.50.10810 -
Pfam PF14619 Snf2-ATP coupling, chromatin remodelling complex
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
MapolyID Mapoly0171s0025 -

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.16 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g06580.1 chr5:7007205..7043998 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g06580.2 chr5:7007205..7043865 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g06580.3 chr5:7007205..7043865 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g06580.4 chr5:7007205..7043998 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.