Mp5g16020



Description

Annotation

Database ID Description
KEGG K12896 serine/arginine-rich splicing factor 7
KOG KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily); C-term missing; [A]
CDD cd12373 RRM_SRSF3_like
Gene3D G3DSA:3.30.70.330 -
SMART SM00360 rrm1_1
Gene3D G3DSA:4.10.60.10 -
ProSiteProfiles PS50158 Zinc finger CCHC-type profile.
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00343 c2hcfinal6
SUPERFAMILY SSF54928 RNA-binding domain, RBD
Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PANTHER PTHR23147 SERINE/ARGININE RICH SPLICING FACTOR
PANTHER PTHR23147:SF167 SERINE/ARGININE-RICH SPLICING FACTOR RSZ21
Pfam PF00098 Zinc knuckle
MapolyID Mapoly0071s0008 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSR4 SR proteins, RNA-splicing Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g16020.1 chr5:17049408..17054974 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g16020.2 chr5:17050388..17055189 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.