Mp5g20500



Description

Annotation

Database ID Description
KOG KOG0274 Cdc4 and related F-box and WD-40 proteins; N-term missing; [R]
KOG KOG3569 RAS signaling inhibitor ST5; [T]
KOG KOG0643 Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1); C-term missing; [JT]
SUPERFAMILY SSF50978 WD40 repeat-like
SMART SM00799 DENN_cls
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
SMART SM00320 WD40_4
Pfam PF03456 uDENN domain
CDD cd00200 WD40
PRINTS PR00320 G protein beta WD-40 repeat signature
PANTHER PTHR12296 C-MYC PROMOTER BINDING PROTEIN
SMART SM00800 uDENN_cls
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature.
Pfam PF00400 WD domain, G-beta repeat
Pfam PF02141 DENN (AEX-3) domain
SMART SM00801 dDENN_cls
Gene3D G3DSA:2.130.10.10 -
PANTHER PTHR12296:SF21 DENN DOMAIN-CONTAINING PROTEIN 3
Gene3D G3DSA:3.40.50.11500 -
ProSiteProfiles PS50211 Tripartite DENN domain profile.
MapolyID Mapoly0058s0028 -

Nomenclature

Gene symbol Product Transcript ID Status
MpSCD Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g20500.1 chr5:21962712..21978049 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.