Mp5g21000



Description

Annotation

Database ID Description
KEGG K10779 transcriptional regulator ATRX
KOG KOG1015 Transcription regulator XNP/ATRX, DEAD-box superfamily; [K]
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.40.50.300 -
Pfam PF00271 Helicase conserved C-terminal domain
Coils Coil Coil
CDD cd18793 SF2_C_SNF
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
Gene3D G3DSA:3.40.50.10810 -
PANTHER PTHR45797:SF1 RAD54-LIKE
Pfam PF17981 Cysteine Rich ADD domain
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
SMART SM00490 helicmild6
ProSiteProfiles PS51533 ADD domain profile.
SMART SM00487 ultradead3
CDD cd18007 DEXHc_ATRX-like
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
PANTHER PTHR45797 RAD54-LIKE
Pfam PF00176 SNF2 family N-terminal domain
Gene3D G3DSA:1.20.120.850 -
CDD cd11726 ADDz_ATRX
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
MapolyID Mapoly0058s0081 -

Nomenclature

Gene symbol Product Transcript ID Status
MpATRX Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g21000.1 chr5:22491549..22521005 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g21000.2 chr5:22491549..22521005 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g21000.3 chr5:22491549..22520985 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g21000.4 chr5:22491549..22515762 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.