Mp5g21520



Description

Annotation

Database ID Description
KOG KOG2333 Uncharacterized conserved protein; C-term missing; [R]
KOG KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1; N-term missing; C-term missing; [A]
Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PANTHER PTHR24009:SF0 ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS51644 OST-type HTH domain profile.
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
SMART SM00360 rrm1_1
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
Gene3D G3DSA:3.30.70.330 -
Pfam PF12872 OST-HTH/LOTUS domain
SUPERFAMILY SSF90229 CCCH zinc finger
PANTHER PTHR24009 RNA-BINDING (RRM/RBD/RNP MOTIFS)
SUPERFAMILY SSF54928 RNA-binding domain, RBD
Gene3D G3DSA:4.10.1000.10 CCCH zinc finger
Coils Coil Coil
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
CDD cd12458 RRM_AtC3H46_like
SMART SM00356 c3hfinal6
MapolyID Mapoly0106s0048 -

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H20 transcription factor, C3H Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g21520.1 chr5:23145513..23155264 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.