Mp5g24460



Description

Annotation

Database ID Description
KOG KOG0384 Chromodomain-helicase DNA-binding protein; [K]
KOG KOG0825 PHD Zn-finger protein; C-term missing; [R]
Gene3D G3DSA:1.10.10.60 -
SUPERFAMILY SSF54160 Chromo domain-like
SMART SM00249 PHD_3
Gene3D G3DSA:2.40.50.40 -
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF06465 Domain of Unknown Function (DUF1087)
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
SMART SM00487 ultradead3
CDD cd18660 CD1_tandem
ProSitePatterns PS01359 Zinc finger PHD-type signature.
Gene3D G3DSA:3.40.50.10810 -
SMART SM00490 helicmild6
Pfam PF00176 SNF2 family N-terminal domain
PANTHER PTHR45623:SF17 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
SMART SM01146 DUF1086_2
Gene3D G3DSA:3.40.50.300 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
CDD cd18793 SF2_C_SNF
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Pfam PF06461 Domain of Unknown Function (DUF1086)
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
CDD cd15532 PHD2_CHD_II
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain
Pfam PF00628 PHD-finger
Pfam PF00271 Helicase conserved C-terminal domain
SMART SM00298 chromo_7
CDD cd18659 CD2_tandem
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
MapolyID Mapoly0010s0012 -

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.17 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g24460.1 chr5:26577384..26602023 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g24460.2 chr5:26577384..26602023 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g24460.3 chr5:26577384..26602023 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.