Mp6g12400



Description

Annotation

Database ID Description
KOG KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily; [KL]
KOG KOG1002 Nucleotide excision repair protein RAD16; N-term missing; C-term missing; [L]
Pfam PF07496 CW-type Zinc Finger
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS51050 Zinc finger CW-type profile.
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
SMART SM00490 helicmild6
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
PANTHER PTHR45626 TRANSCRIPTION TERMINATION FACTOR 2-RELATED
CDD cd18793 SF2_C_SNF
ProSitePatterns PS00518 Zinc finger RING-type signature.
Gene3D G3DSA:3.40.50.10810 -
SUPERFAMILY SSF81383 F-box domain
Pfam PF00176 SNF2 family N-terminal domain
Gene3D G3DSA:3.30.40.100 -
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SMART SM00487 ultradead3
ProSiteProfiles PS50089 Zinc finger RING-type profile.
Gene3D G3DSA:3.40.50.300 -
Gene3D G3DSA:1.20.1280.50 -
PANTHER PTHR45626:SF14 OS01G0952200 PROTEIN
Pfam PF12937 F-box-like
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS50181 F-box domain profile.
MapolyID Mapoly0059s0106 -

Nomenclature

Gene symbol Product Transcript ID Status
Mpsnf1.18 Chromatin related protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g12400.1 chr6:13574552..13580549 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.