Mp6g21420



Description

Annotation

Database ID Description
KEGG K12836 splicing factor U2AF 35 kDa subunit
KOG KOG2202 U2 snRNP splicing factor, small subunit, and related proteins; [A]
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.70.330 -
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
SMART SM00360 rrm1_1
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
CDD cd12539 RRM_U2AF35B
Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PANTHER PTHR12620 U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
PANTHER PTHR12620:SF40 SPLICING FACTOR U2AF SMALL SUBUNIT B
SMART SM00356 c3hfinal6
PRINTS PR01848 U2 auxiliary factor small subunit signature
ProSiteProfiles PS50102 Eukaryotic RNA Recognition Motif (RRM) profile.
SUPERFAMILY SSF54928 RNA-binding domain, RBD
SMART SM00361 rrm2_1
MapolyID Mapoly0091s0013 -

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H26 transcription factor, C3H Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g21420.1 chr6:23659344..23664561 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g21420.2 chr6:23659344..23664561 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g21420.3 chr6:23659344..23664393 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.