Mp7g11720



Description

Annotation

Database ID Description
KEGG K11592 endoribonuclease Dicer [EC:3.1.26.-]
KOG KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases; [A]
Pfam PF00271 Helicase conserved C-terminal domain
ProSitePatterns PS00517 Ribonuclease III family signature.
Gene3D G3DSA:1.10.1520.10 -
Pfam PF00636 Ribonuclease III domain
Gene3D G3DSA:3.40.50.300 -
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50142 Ribonuclease III family domain profile.
ProSiteProfiles PS51327 Dicer double-stranded RNA-binding fold domain profile.
SMART SM00490 helicmild6
PANTHER PTHR14950:SF15 DICER-LIKE PROTEIN 4
Pfam PF04851 Type III restriction enzyme, res subunit
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Pfam PF03368 Dicer dimerisation domain
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:3.30.160.380 -
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
PANTHER PTHR14950 DICER-RELATED
SUPERFAMILY SSF54768 dsRNA-binding domain-like
CDD cd00593 RIBOc
SUPERFAMILY SSF69065 RNase III domain-like
SMART SM00358 DRBM_3
CDD cd19869 DSRM_DCL_plant
ProSiteProfiles PS50821 PAZ domain profile.
SUPERFAMILY SSF101690 PAZ domain
Gene3D G3DSA:2.170.260.10 paz domain
SMART SM00535 riboneu5
Pfam PF02170 PAZ domain
SMART SM00949 PAZ_2_a_3
Pfam PF14709 double strand RNA binding domain from DEAD END PROTEIN 1
Gene3D G3DSA:3.30.160.20 -
CDD cd18034 DEXHc_dicer
SMART SM00487 ultradead3
MapolyID Mapoly0003s0184 -

Nomenclature

Gene symbol Product Transcript ID Status
MpDCL4 miRNA biogenesis protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g11720.1 chr7:13023888..13053243 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.