Mp7g12090



Description

Annotation

Database ID Description
KEGG K11592 endoribonuclease Dicer [EC:3.1.26.-]
KOG KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases; [A]
KOG KOG3732 Staufen and related double-stranded-RNA-binding proteins; C-term missing; [UK]
KOG KOG0670 U4/U6-associated splicing factor PRP4; C-term missing; [A]
SMART SM00487 ultradead3
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR14950:SF44 ENDORIBONUCLEASE DICER HOMOLOG 1
Pfam PF00636 Ribonuclease III domain
SUPERFAMILY SSF54768 dsRNA-binding domain-like
Gene3D G3DSA:3.30.160.20 -
CDD cd00593 RIBOc
ProSiteProfiles PS50142 Ribonuclease III family domain profile.
Pfam PF02170 PAZ domain
CDD cd18802 SF2_C_dicer
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
PANTHER PTHR14950 DICER-RELATED
Gene3D G3DSA:3.40.50.300 -
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
ProSiteProfiles PS50821 PAZ domain profile.
SMART SM00949 PAZ_2_a_3
SMART SM00490 helicmild6
SMART SM00535 riboneu5
Coils Coil Coil
Pfam PF00271 Helicase conserved C-terminal domain
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile.
CDD cd18034 DEXHc_dicer
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
Pfam PF14709 double strand RNA binding domain from DEAD END PROTEIN 1
SUPERFAMILY SSF69065 RNase III domain-like
Gene3D G3DSA:3.30.160.380 -
SUPERFAMILY SSF101690 PAZ domain
ProSitePatterns PS00517 Ribonuclease III family signature.
Pfam PF03368 Dicer dimerisation domain
Pfam PF04851 Type III restriction enzyme, res subunit
Gene3D G3DSA:1.10.1520.10 -
ProSiteProfiles PS51327 Dicer double-stranded RNA-binding fold domain profile.
Gene3D G3DSA:2.170.260.10 paz domain
CDD cd19869 DSRM_DCL_plant
SMART SM00358 DRBM_3
MapolyID Mapoly0003s0222 -

Nomenclature

Gene symbol Product Transcript ID Status
MpDCL1b miRNA biogenesis protein Provisional

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g12090.1 chr7:13431014..13447162 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.