Mp1g10300



Description

Annotation

Database ID Description
KEGG K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
KOG KOG3741 Poly(A) ribonuclease subunit; N-term missing; [A]
SUPERFAMILY SSF90229 CCCH zinc finger
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF56112 Protein kinase-like (PK-like)
Pfam PF18101 Pan3 Pseudokinase domain
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
SMART SM00356 c3hfinal6
PANTHER PTHR12272 DEADENYLATION COMPLEX SUBUNIT PAN3
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
Coils Coil Coil
CDD cd00180 PKc
Gene3D G3DSA:4.10.1000.10 CCCH zinc finger
GO GO:0006397 mRNA processing
GO GO:0046872 metal ion binding
GO GO:0003723 RNA binding
GO GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening
GO GO:0031251 PAN complex
MapolyID Mapoly0014s0196 -

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H6 transcription factor, C3H Provisional

Expression Level powered by MBEX

Caution: MBEX data are analyzed based on the v7.1 genome.

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g10300.1 chr1:10635456..10647905 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g10300.2 chr1:10635456..10647905 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.