Toggle navigation
Genome browser
JBrowse
WebApollo (login required)
Tools
BLAST (Marchantia genomes and genes)
BLAST (JGI 3.1 and plant species)
GMAP - cDNA alignment
CasFinder
Utilities
Genome Slicer
Gene Fetcher
Gene ID converter
External tools
GGGenome
CRISPRdirect
MBEX (Expression DB)
Nomenclature
Archives
Download
Standard genome (Male + Female, MpTak v6.1)
Tak1 reference genome V5.1 revision2 (MpTak1 v5.1r2)
Tak1 reference genome V5.1 revision1 (MpTak1 v5.1r1)
JGI3.1 reference genome
M. polymorpha subsp. polymorpha BR5 (MppBR5)
M. polymorpha subsp. montivagans SA2 (MpmSA2)
Organellar genomes (Kitashirakawa-2)
About
About us
Genomes
FAQ
CasFinder: Guide RNA design for the CRISPR/Cas9 system
Genome
Mp JGI 3.1
MpTak1 v5.1
Search conditions:
Length of gRNA: 18 nt, Seed Region: 9 nt, Primary/secondary PAM: NGG/NAG
Length of gRNA: 20 nt, Seed Region: 8 nt, Primary/secondary PAM: NGG/NAG
Enter your sequence(s) in FASTA format below. (Please make your sequence as short as possible!
Maximum=1,000bp
)
Options:
Filter out T-strings with this or greater length:
Input sequence is exogeneous.
Force search of repeat regions in input sequences
Reference:
Aach J, Mali P, Church GM. 2014. CasFinder: Flexible algorithm for identifying specific Cas9 targets in genomes. bioRxiv doi: 10.1101/005074