MarpolBase
Genome Database for Marchantia polymorpha
Marchantia Gene Info
Genome Browser
Gene Nomenclature
[Important notice] To maintain nomenclature consistent and systematic, we strongly recommend that gene names/symbols should be registered before publications and presentations.
Analytical Tools
BLAST similarity search MpTak1v5.1 (under construction)
BLAST similarity search JGI 3.1 and plant species (former website)
GMAP cDNA mapping/alignment to the Marchantia genome
CasFinder sgRNA designing for the CRISPR/Cas9 system
GGGenome Ultrafast genome sequence search (for JGI 3.1)
CRISPRdirect Fast target search for the CRISPR/Cas9 system (for JGI 3.1)
Utility tools
Marcantia Literature Archives
Download Marchantia Genome Resources
The new revision of the standard reference genome MpTak_v6.1r2 ( male Tak1 genome + female Tak2 U-chr) has been released. Some of the gene models have been updated and some of the unplaced scaffolds have been removed.
Now MpTak_v6.1r2 is designated as the default genome in MarpolBase.
See README for what has been changed. The genome data is downloadable from here
The expression database for Marchantia, MBEX: Marpolbase Expression, has become available!
Play around with it at https://marchantia.info/mbex/.
Please see MBEX paper in PCP for more detail.
MpTak1_v5.1r2 (Tak1 reference genome with improved gene annotation) and MpTak_v6.1 (Standard reference genome, male Tak1 genome + female Tak2 U-chr).
Genome data for Mp subsp. polymorpha (MppBR5) and subsp. montivagans (MpmSA2) have become available. (Linde, et al. 2020.)
Genome databases for JGI 3.1 and MpTak1v5.1 have been integrated.
The paper describing chromatin profiles and the chromosome-scale genome assebmly (ver5.1) of Marchantia was published from Current Biology.